CRISPRone

CRISPRone report for GCA_900689945.1_8140_6_18

♦ Seq 1: CAADCH010000002.1 Clostridioides difficile strain LSHTM-18 genome assembly, contig: ERS139864SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 376614 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 194122-194217 bp Zoom in on locus 1 x2 CRISPR array Location: 194122-194217 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 194122-194217 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 194122-194217 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADCH010000003.1 Clostridioides difficile strain LSHTM-18 genome assembly, contig: ERS139864SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 366484 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97939-98296 bp 2 Locus 2: 178082-187805 bp 3 Locus 3: 239015-249973 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 CRISPR array Location: 97939-98296 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 97939-98296 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 178082-179191 bp Gene: cas14:cas14 Type: Type-V Location: 179344-180516 bp Gene: unk Type: unknown Location: 180544-181002 bp Gene: unk Type: unknown Location: 181150-181284 bp Gene: pfam01881:cas6 Type: other Location: 181316-182053 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 182058-183524 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 183544-184557 bp Gene: cd09693:cas5 Type: Type-I Location: 184573-185370 bp Gene: cd09641:cas3HD Type: Type-I Location: 185397-187805 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 239015-239500 bp Gene: cd06127:DEDDh Type: Type-I Location: 246303-247349 bp Gene: unk Type: unknown Location: 247721-248227 bp Gene: unk Type: unknown Location: 248640-249308 bp Gene: cd06127:DEDDh Type: Type-I Location: 249467-249973 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 97939-98296 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADCH010000001.1 Clostridioides difficile strain LSHTM-18 genome assembly, contig: ERS139864SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 473946 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28859-29020 bp 2 Locus 2: 138279-138899 bp 3 Locus 3: 309269-309689 bp Zoom in on locus 1 x3 Zoom in on locus 2 x10 Zoom in on locus 3 x7 CRISPR array Location: 28859-29020 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 28859-29020 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 138279-138899 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 138279-138899 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 309269-309689 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 309269-309689 bp Num of repeats: 7 Spacers: s12-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 28859-29020 bp]: array | spacers
           [Locus range 138279-138899 bp]: array | spacers
           [Locus range 309269-309689 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)