CRISPRone

CRISPRone report for GCA_900690085.1_8140_6_33

♦ Seq 1: CAADCL010000037.1 Clostridioides difficile strain LSHTM-33 genome assembly, contig: ERS139879SCcontig000037, whole genome shotgun sequence

⇒Summary: seq-len = 11583 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4984-8038 bp Zoom in on locus 1 x3 x4 CRISPR array Location: 4984-5144 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 4984-5144 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 7812-8038 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 7812-8038 bp Num of repeats: 4 Spacers: s3-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4984-5144 bp]: array | spacers
           [Locus range 7812-8038 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADCL010000004.1 Clostridioides difficile strain LSHTM-33 genome assembly, contig: ERS139879SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 217676 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78928-79547 bp 2 Locus 2: 188807-188967 bp Zoom in on locus 1 x10 Zoom in on locus 2 x3 CRISPR array Location: 78928-79547 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 78928-79547 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 188807-188967 bp Num of repeats: 3 Spacers: s10-s11 CRISPR array Location: 188807-188967 bp Num of repeats: 3 Spacers: s10-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78928-79547 bp]: array | spacers
           [Locus range 188807-188967 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADCL010000001.1 Clostridioides difficile strain LSHTM-33 genome assembly, contig: ERS139879SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 585129 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 335247-346205 bp 2 Locus 2: 397415-407138 bp 3 Locus 3: 486925-487150 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x4 Gene: cd06127:DEDDh Type: Type-I Location: 335247-335753 bp Gene: unk Type: unknown Location: 335912-336580 bp Gene: unk Type: unknown Location: 336993-337499 bp Gene: cd06127:DEDDh Type: Type-I Location: 337871-338908 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 345720-346205 bp Gene: cd09641:cas3HD Type: Type-I Location: 397415-399823 bp Gene: cd09693:cas5 Type: Type-I Location: 399850-400647 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 400663-401676 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 401696-403162 bp Gene: pfam01881:cas6 Type: other Location: 403167-403904 bp Gene: unk Type: unknown Location: 404218-404676 bp Gene: cas14:cas14 Type: Type-V Location: 404704-405876 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 406029-407138 bp CRISPR array Location: 486925-487150 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 486925-487150 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 486925-487150 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADCL010000010.1 Clostridioides difficile strain LSHTM-33 genome assembly, contig: ERS139879SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 160463 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 128870-129290 bp Zoom in on locus 1 x7 CRISPR array Location: 128870-129290 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 128870-129290 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 128870-129290 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADCL010000002.1 Clostridioides difficile strain LSHTM-33 genome assembly, contig: ERS139879SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 376596 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 182399-182493 bp Zoom in on locus 1 x2 CRISPR array Location: 182399-182493 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 182399-182493 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 182399-182493 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)