CRISPRone

CRISPRone report for GCA_900690145.1_8140_6_40

♦ Seq 1: CAADCO010000006.1 Clostridioides difficile strain LSHTM-40 genome assembly, contig: ERS139886SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 217784 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 79036-79655 bp 2 Locus 2: 188915-189075 bp Zoom in on locus 1 x10 Zoom in on locus 2 x3 CRISPR array Location: 79036-79655 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 79036-79655 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 188915-189075 bp Num of repeats: 3 Spacers: s10-s11 CRISPR array Location: 188915-189075 bp Num of repeats: 3 Spacers: s10-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 79036-79655 bp]: array | spacers
           [Locus range 188915-189075 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADCO010000038.1 Clostridioides difficile strain LSHTM-40 genome assembly, contig: ERS139886SCcontig000038, whole genome shotgun sequence

⇒Summary: seq-len = 12091 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8513-9001 bp Zoom in on locus 1 x8 CRISPR array Location: 8513-9001 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 8513-9001 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8513-9001 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADCO010000001.1 Clostridioides difficile strain LSHTM-40 genome assembly, contig: ERS139886SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 376596 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 194104-194199 bp Zoom in on locus 1 x2 CRISPR array Location: 194104-194199 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 194104-194199 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 194104-194199 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADCO010000002.1 Clostridioides difficile strain LSHTM-40 genome assembly, contig: ERS139886SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 345142 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 95308-106266 bp 2 Locus 2: 157476-167199 bp 3 Locus 3: 246986-247211 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x4 Gene: cd06127:DEDDh Type: Type-I Location: 95308-95814 bp Gene: unk Type: unknown Location: 95973-96641 bp Gene: unk Type: unknown Location: 97054-97560 bp Gene: cd06127:DEDDh Type: Type-I Location: 97932-98969 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 105781-106266 bp Gene: cd09641:cas3HD Type: Type-I Location: 157476-159884 bp Gene: cd09693:cas5 Type: Type-I Location: 159911-160708 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 160724-161737 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 161757-163223 bp Gene: pfam01881:cas6 Type: other Location: 163228-163965 bp Gene: unk Type: unknown Location: 164279-164737 bp Gene: cas14:cas14 Type: Type-V Location: 164765-165937 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 166090-167199 bp CRISPR array Location: 246986-247211 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 246986-247211 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 246986-247211 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADCO010000033.1 Clostridioides difficile strain LSHTM-40 genome assembly, contig: ERS139886SCcontig000033, whole genome shotgun sequence

⇒Summary: seq-len = 18214 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11615-14669 bp Zoom in on locus 1 x3 x4 CRISPR array Location: 11615-11775 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 11615-11775 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 14443-14669 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 14443-14669 bp Num of repeats: 4 Spacers: s3-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11615-11775 bp]: array | spacers
           [Locus range 14443-14669 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADCO010000003.1 Clostridioides difficile strain LSHTM-40 genome assembly, contig: ERS139886SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 293397 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164109-164528 bp Zoom in on locus 1 x7 CRISPR array Location: 164109-164528 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 164109-164528 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 164109-164528 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)