CRISPRone

CRISPRone report for GCA_900690155.1_8140_6_4

♦ Seq 1: CAADCN010000001.1 Clostridioides difficile strain LSHTM-4 genome assembly, contig: ERS139850SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 585031 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97934-98160 bp 2 Locus 2: 177946-187669 bp 3 Locus 3: 238879-249837 bp Zoom in on locus 1 x4 Zoom in on locus 2 Zoom in on locus 3 CRISPR array Location: 97934-98160 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 97934-98160 bp Num of repeats: 4 Spacers: s1-s3 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 177946-179055 bp Gene: cas14:cas14 Type: Type-V Location: 179208-180380 bp Gene: unk Type: unknown Location: 180408-180866 bp Gene: pfam01881:cas6 Type: other Location: 181180-181917 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 181922-183388 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 183408-184421 bp Gene: cd09693:cas5 Type: Type-I Location: 184437-185234 bp Gene: cd09641:cas3HD Type: Type-I Location: 185261-187669 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 238879-239364 bp Gene: cd06127:DEDDh Type: Type-I Location: 246167-247213 bp Gene: unk Type: unknown Location: 247585-248091 bp Gene: unk Type: unknown Location: 248504-249172 bp Gene: cd06127:DEDDh Type: Type-I Location: 249331-249837 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 97934-98160 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADCN010000003.1 Clostridioides difficile strain LSHTM-4 genome assembly, contig: ERS139850SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 377219 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 194164-194259 bp Zoom in on locus 1 x2 CRISPR array Location: 194164-194259 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 194164-194259 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 194164-194259 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADCN010000002.1 Clostridioides difficile strain LSHTM-4 genome assembly, contig: ERS139850SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 528719 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164109-164528 bp 2 Locus 2: 295918-298972 bp 3 Locus 3: 389822-390441 bp 4 Locus 4: 499701-499861 bp Zoom in on locus 1 x7 Zoom in on locus 2 x3 x4 Zoom in on locus 3 x10 Zoom in on locus 4 x3 CRISPR array Location: 164109-164528 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 164109-164528 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 295918-296078 bp Num of repeats: 3 Spacers: s7-s8 CRISPR array Location: 295918-296078 bp Num of repeats: 3 Spacers: s7-s8 CRISPR array Location: 298746-298972 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 298746-298972 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 389822-390441 bp Num of repeats: 10 Spacers: s12-s20 CRISPR array Location: 389822-390441 bp Num of repeats: 10 Spacers: s12-s20 CRISPR array Location: 499701-499861 bp Num of repeats: 3 Spacers: s21-s22 CRISPR array Location: 499701-499861 bp Num of repeats: 3 Spacers: s21-s22 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 164109-164528 bp]: array | spacers
           [Locus range 295918-296078 bp]: array | spacers
           [Locus range 298746-298972 bp]: array | spacers
           [Locus range 389822-390441 bp]: array | spacers
           [Locus range 499701-499861 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)