CRISPRone

CRISPRone report for GCA_900690175.1_8140_6_39

♦ Seq 1: CAADCP010000012.1 Clostridioides difficile strain LSHTM-39 genome assembly, contig: ERS139885SCcontig000012, whole genome shotgun sequence

⇒Summary: seq-len = 156511 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11615-14669 bp 2 Locus 2: 110010-110629 bp Zoom in on locus 1 x3 x4 Zoom in on locus 2 x10 CRISPR array Location: 11615-11775 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 11615-11775 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 14443-14669 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 14443-14669 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 110010-110629 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 110010-110629 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11615-11775 bp]: array | spacers
           [Locus range 14443-14669 bp]: array | spacers
           [Locus range 110010-110629 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADCP010000005.1 Clostridioides difficile strain LSHTM-39 genome assembly, contig: ERS139885SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 293397 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 128870-129290 bp Zoom in on locus 1 x7 CRISPR array Location: 128870-129290 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 128870-129290 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 128870-129290 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADCP010000003.1 Clostridioides difficile strain LSHTM-39 genome assembly, contig: ERS139885SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 345147 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97936-98162 bp 2 Locus 2: 177948-187671 bp 3 Locus 3: 238881-249839 bp Zoom in on locus 1 x4 Zoom in on locus 2 Zoom in on locus 3 CRISPR array Location: 97936-98162 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 97936-98162 bp Num of repeats: 4 Spacers: s1-s3 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 177948-179057 bp Gene: cas14:cas14 Type: Type-V Location: 179210-180382 bp Gene: unk Type: unknown Location: 180410-180868 bp Gene: pfam01881:cas6 Type: other Location: 181182-181919 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 181924-183390 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 183410-184423 bp Gene: cd09693:cas5 Type: Type-I Location: 184439-185236 bp Gene: cd09641:cas3HD Type: Type-I Location: 185263-187671 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 238881-239366 bp Gene: cd06127:DEDDh Type: Type-I Location: 246169-247215 bp Gene: unk Type: unknown Location: 247587-248093 bp Gene: unk Type: unknown Location: 248506-249174 bp Gene: cd06127:DEDDh Type: Type-I Location: 249333-249839 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 97936-98162 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADCP010000002.1 Clostridioides difficile strain LSHTM-39 genome assembly, contig: ERS139885SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 376599 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 182399-182493 bp Zoom in on locus 1 x2 CRISPR array Location: 182399-182493 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 182399-182493 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 182399-182493 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADCP010000016.1 Clostridioides difficile strain LSHTM-39 genome assembly, contig: ERS139885SCcontig000016, whole genome shotgun sequence

⇒Summary: seq-len = 88460 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59591-59751 bp Zoom in on locus 1 x3 CRISPR array Location: 59591-59751 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 59591-59751 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 59591-59751 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)