CRISPRone

CRISPRone report for GCA_900690335.1_8140_6_54

♦ Seq 1: CAADCQ010000001.1 Clostridioides difficile strain LSHTM-54 genome assembly, contig: ERS139900SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 600429 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 350594-361552 bp 2 Locus 2: 412762-422485 bp 3 Locus 3: 502272-502497 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x4 Gene: cd06127:DEDDh Type: Type-I Location: 350594-351100 bp Gene: unk Type: unknown Location: 351259-351927 bp Gene: unk Type: unknown Location: 352340-352846 bp Gene: cd06127:DEDDh Type: Type-I Location: 353218-354255 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 361067-361552 bp Gene: cd09641:cas3HD Type: Type-I Location: 412762-415170 bp Gene: cd09693:cas5 Type: Type-I Location: 415197-415994 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 416010-417023 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 417043-418509 bp Gene: pfam01881:cas6 Type: other Location: 418514-419251 bp Gene: unk Type: unknown Location: 419565-420023 bp Gene: cas14:cas14 Type: Type-V Location: 420051-421223 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 421376-422485 bp CRISPR array Location: 502272-502497 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 502272-502497 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 502272-502497 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADCQ010000006.1 Clostridioides difficile strain LSHTM-54 genome assembly, contig: ERS139900SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 244960 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28859-29020 bp 2 Locus 2: 138279-138899 bp 3 Locus 3: 229748-232803 bp Zoom in on locus 1 x3 Zoom in on locus 2 x10 Zoom in on locus 3 x4 x3 CRISPR array Location: 28859-29020 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 28859-29020 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 138279-138899 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 138279-138899 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 229748-229975 bp Num of repeats: 4 Spacers: s12-s14 CRISPR array Location: 229748-229975 bp Num of repeats: 4 Spacers: s12-s14 CRISPR array Location: 232642-232803 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 232642-232803 bp Num of repeats: 3 Spacers: s15-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 28859-29020 bp]: array | spacers
           [Locus range 138279-138899 bp]: array | spacers
           [Locus range 229748-229975 bp]: array | spacers
           [Locus range 232642-232803 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADCQ010000002.1 Clostridioides difficile strain LSHTM-54 genome assembly, contig: ERS139900SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 377205 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 182962-183056 bp Zoom in on locus 1 x2 CRISPR array Location: 182962-183056 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 182962-183056 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 182962-183056 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADCQ010000003.1 Clostridioides difficile strain LSHTM-54 genome assembly, contig: ERS139900SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 293399 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164109-164528 bp Zoom in on locus 1 x7 CRISPR array Location: 164109-164528 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 164109-164528 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 164109-164528 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)