CRISPRone

CRISPRone report for GCA_900690385.1_8140_6_62

♦ Seq 1: CAADCU010000003.1 Clostridioides difficile strain LSHTM-62 genome assembly, contig: ERS139963SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 293565 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164259-164678 bp Zoom in on locus 1 x7 CRISPR array Location: 164259-164678 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 164259-164678 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 164259-164678 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADCU010000002.1 Clostridioides difficile strain LSHTM-62 genome assembly, contig: ERS139963SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 345517 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 95396-106354 bp 2 Locus 2: 157564-167287 bp 3 Locus 3: 247074-247299 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x4 Gene: cd06127:DEDDh Type: Type-I Location: 95396-95902 bp Gene: unk Type: unknown Location: 96061-96729 bp Gene: unk Type: unknown Location: 97142-97648 bp Gene: cd06127:DEDDh Type: Type-I Location: 98020-99057 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 105869-106354 bp Gene: cd09641:cas3HD Type: Type-I Location: 157564-159972 bp Gene: cd09693:cas5 Type: Type-I Location: 159999-160796 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 160812-161825 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 161845-163311 bp Gene: pfam01881:cas6 Type: other Location: 163316-164053 bp Gene: unk Type: unknown Location: 164367-164825 bp Gene: cas14:cas14 Type: Type-V Location: 164853-166025 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 166178-167287 bp CRISPR array Location: 247074-247299 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 247074-247299 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 247074-247299 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADCU010000010.1 Clostridioides difficile strain LSHTM-62 genome assembly, contig: ERS139963SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 188307 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28859-29020 bp 2 Locus 2: 173113-176168 bp Zoom in on locus 1 x3 Zoom in on locus 2 x4 x3 CRISPR array Location: 28859-29020 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 28859-29020 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 173113-173340 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 173113-173340 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 176007-176168 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 176007-176168 bp Num of repeats: 3 Spacers: s6-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 28859-29020 bp]: array | spacers
           [Locus range 173113-173340 bp]: array | spacers
           [Locus range 176007-176168 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADCU010000001.1 Clostridioides difficile strain LSHTM-62 genome assembly, contig: ERS139963SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 376581 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 194138-194233 bp Zoom in on locus 1 x2 CRISPR array Location: 194138-194233 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 194138-194233 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 194138-194233 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADCU010000021.1 Clostridioides difficile strain LSHTM-62 genome assembly, contig: ERS139963SCcontig000021, whole genome shotgun sequence

⇒Summary: seq-len = 56582 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10399-11018 bp Zoom in on locus 1 x10 CRISPR array Location: 10399-11018 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 10399-11018 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10399-11018 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)