CRISPRone

CRISPRone report for GCA_900690415.1_8140_6_61

♦ Seq 1: CAADCT010000002.1 Clostridioides difficile strain LSHTM-61 genome assembly, contig: ERS139907SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 376656 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 182399-182493 bp Zoom in on locus 1 x2 CRISPR array Location: 182399-182493 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 182399-182493 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 182399-182493 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADCT010000003.1 Clostridioides difficile strain LSHTM-61 genome assembly, contig: ERS139907SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 293401 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 128874-129294 bp Zoom in on locus 1 x7 CRISPR array Location: 128874-129294 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 128874-129294 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 128874-129294 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADCT010000007.1 Clostridioides difficile strain LSHTM-61 genome assembly, contig: ERS139907SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 244583 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11619-14673 bp 2 Locus 2: 105523-106142 bp 3 Locus 3: 215402-215562 bp Zoom in on locus 1 x3 x4 Zoom in on locus 2 x10 Zoom in on locus 3 x3 CRISPR array Location: 11619-11779 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 11619-11779 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 14447-14673 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 14447-14673 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 105523-106142 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 105523-106142 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 215402-215562 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 215402-215562 bp Num of repeats: 3 Spacers: s15-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11619-11779 bp]: array | spacers
           [Locus range 14447-14673 bp]: array | spacers
           [Locus range 105523-106142 bp]: array | spacers
           [Locus range 215402-215562 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADCT010000001.1 Clostridioides difficile strain LSHTM-61 genome assembly, contig: ERS139907SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 600700 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98212-98438 bp 2 Locus 2: 178224-187947 bp 3 Locus 3: 239157-250115 bp Zoom in on locus 1 x4 Zoom in on locus 2 Zoom in on locus 3 CRISPR array Location: 98212-98438 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 98212-98438 bp Num of repeats: 4 Spacers: s1-s3 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 178224-179333 bp Gene: cas14:cas14 Type: Type-V Location: 179486-180658 bp Gene: unk Type: unknown Location: 180686-181144 bp Gene: pfam01881:cas6 Type: other Location: 181458-182195 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 182200-183666 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 183686-184699 bp Gene: cd09693:cas5 Type: Type-I Location: 184715-185512 bp Gene: cd09641:cas3HD Type: Type-I Location: 185539-187947 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 239157-239642 bp Gene: cd06127:DEDDh Type: Type-I Location: 246445-247491 bp Gene: unk Type: unknown Location: 247863-248369 bp Gene: unk Type: unknown Location: 248782-249450 bp Gene: cd06127:DEDDh Type: Type-I Location: 249609-250115 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 98212-98438 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)