CRISPRone

CRISPRone report for GCA_900690535.1_8140_6_72

♦ Seq 1: CAADDB010000004.1 Clostridioides difficile strain LSHTM-72 genome assembly, contig: ERS139918SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 293397 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164109-164528 bp Zoom in on locus 1 x7 CRISPR array Location: 164109-164528 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 164109-164528 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 164109-164528 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADDB010000001.1 Clostridioides difficile strain LSHTM-72 genome assembly, contig: ERS139918SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 377174 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 194119-194214 bp Zoom in on locus 1 x2 CRISPR array Location: 194119-194214 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 194119-194214 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 194119-194214 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADDB010000002.1 Clostridioides difficile strain LSHTM-72 genome assembly, contig: ERS139918SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 345193 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97964-98190 bp 2 Locus 2: 177976-187699 bp 3 Locus 3: 238909-249867 bp Zoom in on locus 1 x4 Zoom in on locus 2 Zoom in on locus 3 CRISPR array Location: 97964-98190 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 97964-98190 bp Num of repeats: 4 Spacers: s1-s3 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 177976-179085 bp Gene: cas14:cas14 Type: Type-V Location: 179238-180410 bp Gene: unk Type: unknown Location: 180438-180896 bp Gene: pfam01881:cas6 Type: other Location: 181210-181947 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 181952-183418 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 183438-184451 bp Gene: cd09693:cas5 Type: Type-I Location: 184467-185264 bp Gene: cd09641:cas3HD Type: Type-I Location: 185291-187699 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 238909-239394 bp Gene: cd06127:DEDDh Type: Type-I Location: 246197-247243 bp Gene: unk Type: unknown Location: 247615-248121 bp Gene: unk Type: unknown Location: 248534-249202 bp Gene: cd06127:DEDDh Type: Type-I Location: 249361-249867 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 97964-98190 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADDB010000006.1 Clostridioides difficile strain LSHTM-72 genome assembly, contig: ERS139918SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 244873 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28790-28951 bp 2 Locus 2: 138216-138836 bp 3 Locus 3: 229685-232740 bp Zoom in on locus 1 x3 Zoom in on locus 2 x10 Zoom in on locus 3 x4 x3 CRISPR array Location: 28790-28951 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 28790-28951 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 138216-138836 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 138216-138836 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 229685-229912 bp Num of repeats: 4 Spacers: s12-s14 CRISPR array Location: 229685-229912 bp Num of repeats: 4 Spacers: s12-s14 CRISPR array Location: 232579-232740 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 232579-232740 bp Num of repeats: 3 Spacers: s15-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 28790-28951 bp]: array | spacers
           [Locus range 138216-138836 bp]: array | spacers
           [Locus range 229685-229912 bp]: array | spacers
           [Locus range 232579-232740 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)