CRISPRone

CRISPRone report for GCA_900690635.1_8140_6_84

♦ Seq 1: CAADDE010000002.1 Clostridioides difficile strain LSHTM-84 genome assembly, contig: ERS139930SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 345523 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98216-98442 bp 2 Locus 2: 178228-187951 bp 3 Locus 3: 239161-250119 bp Zoom in on locus 1 x4 Zoom in on locus 2 Zoom in on locus 3 CRISPR array Location: 98216-98442 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 98216-98442 bp Num of repeats: 4 Spacers: s1-s3 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 178228-179337 bp Gene: cas14:cas14 Type: Type-V Location: 179490-180662 bp Gene: unk Type: unknown Location: 180690-181148 bp Gene: pfam01881:cas6 Type: other Location: 181462-182199 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 182204-183670 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 183690-184703 bp Gene: cd09693:cas5 Type: Type-I Location: 184719-185516 bp Gene: cd09641:cas3HD Type: Type-I Location: 185543-187951 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 239161-239646 bp Gene: cd06127:DEDDh Type: Type-I Location: 246449-247495 bp Gene: unk Type: unknown Location: 247867-248373 bp Gene: unk Type: unknown Location: 248786-249454 bp Gene: cd06127:DEDDh Type: Type-I Location: 249613-250119 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 98216-98442 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADDE010000006.1 Clostridioides difficile strain LSHTM-84 genome assembly, contig: ERS139930SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 245193 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12145-15199 bp 2 Locus 2: 106041-106660 bp 3 Locus 3: 215920-216080 bp Zoom in on locus 1 x3 x4 Zoom in on locus 2 x10 Zoom in on locus 3 x3 CRISPR array Location: 12145-12305 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 12145-12305 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 14973-15199 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 14973-15199 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 106041-106660 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 106041-106660 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 215920-216080 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 215920-216080 bp Num of repeats: 3 Spacers: s15-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12145-12305 bp]: array | spacers
           [Locus range 14973-15199 bp]: array | spacers
           [Locus range 106041-106660 bp]: array | spacers
           [Locus range 215920-216080 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADDE010000003.1 Clostridioides difficile strain LSHTM-84 genome assembly, contig: ERS139930SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 293559 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164259-164678 bp Zoom in on locus 1 x7 CRISPR array Location: 164259-164678 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 164259-164678 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 164259-164678 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADDE010000001.1 Clostridioides difficile strain LSHTM-84 genome assembly, contig: ERS139930SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 376728 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 182455-182549 bp Zoom in on locus 1 x2 CRISPR array Location: 182455-182549 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 182455-182549 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 182455-182549 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)