CRISPRone

CRISPRone report for GCA_900690645.1_8140_6_79

♦ Seq 1: CAADDD010000002.1 Clostridioides difficile strain LSHTM-79 genome assembly, contig: ERS139925SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 360483 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97935-98161 bp 2 Locus 2: 177947-187670 bp 3 Locus 3: 238880-249838 bp Zoom in on locus 1 x4 Zoom in on locus 2 Zoom in on locus 3 CRISPR array Location: 97935-98161 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 97935-98161 bp Num of repeats: 4 Spacers: s1-s3 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 177947-179056 bp Gene: cas14:cas14 Type: Type-V Location: 179209-180381 bp Gene: unk Type: unknown Location: 180409-180867 bp Gene: pfam01881:cas6 Type: other Location: 181181-181918 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 181923-183389 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 183409-184422 bp Gene: cd09693:cas5 Type: Type-I Location: 184438-185235 bp Gene: cd09641:cas3HD Type: Type-I Location: 185262-187670 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 238880-239365 bp Gene: cd06127:DEDDh Type: Type-I Location: 246168-247214 bp Gene: unk Type: unknown Location: 247586-248092 bp Gene: unk Type: unknown Location: 248505-249173 bp Gene: cd06127:DEDDh Type: Type-I Location: 249332-249838 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 97935-98161 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADDD010000004.1 Clostridioides difficile strain LSHTM-79 genome assembly, contig: ERS139925SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 293551 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164259-164678 bp Zoom in on locus 1 x7 CRISPR array Location: 164259-164678 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 164259-164678 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 164259-164678 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADDD010000017.1 Clostridioides difficile strain LSHTM-79 genome assembly, contig: ERS139925SCcontig000017, whole genome shotgun sequence

⇒Summary: seq-len = 92825 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29022-29183 bp Zoom in on locus 1 x3 CRISPR array Location: 29022-29183 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 29022-29183 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29022-29183 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADDD010000012.1 Clostridioides difficile strain LSHTM-79 genome assembly, contig: ERS139925SCcontig000012, whole genome shotgun sequence

⇒Summary: seq-len = 151693 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11619-14673 bp 2 Locus 2: 105523-106142 bp Zoom in on locus 1 x3 x4 Zoom in on locus 2 x10 CRISPR array Location: 11619-11779 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 11619-11779 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 14447-14673 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 14447-14673 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 105523-106142 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 105523-106142 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11619-11779 bp]: array | spacers
           [Locus range 14447-14673 bp]: array | spacers
           [Locus range 105523-106142 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADDD010000001.1 Clostridioides difficile strain LSHTM-79 genome assembly, contig: ERS139925SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 376554 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 182347-182441 bp Zoom in on locus 1 x2 CRISPR array Location: 182347-182441 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 182347-182441 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 182347-182441 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)