CRISPRone

CRISPRone report for GCA_900690695.1_8140_6_86

♦ Seq 1: CAADDF010000002.1 Clostridioides difficile strain LSHTM-86 genome assembly, contig: ERS139971SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 376642 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 194150-194245 bp Zoom in on locus 1 x2 CRISPR array Location: 194150-194245 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 194150-194245 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 194150-194245 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADDF010000005.1 Clostridioides difficile strain LSHTM-86 genome assembly, contig: ERS139971SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 245201 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12145-15199 bp 2 Locus 2: 106049-106668 bp 3 Locus 3: 215928-216088 bp Zoom in on locus 1 x3 x4 Zoom in on locus 2 x10 Zoom in on locus 3 x3 CRISPR array Location: 12145-12305 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 12145-12305 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 14973-15199 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 14973-15199 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 106049-106668 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 106049-106668 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 215928-216088 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 215928-216088 bp Num of repeats: 3 Spacers: s15-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12145-12305 bp]: array | spacers
           [Locus range 14973-15199 bp]: array | spacers
           [Locus range 106049-106668 bp]: array | spacers
           [Locus range 215928-216088 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADDF010000003.1 Clostridioides difficile strain LSHTM-86 genome assembly, contig: ERS139971SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 345234 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97941-98167 bp 2 Locus 2: 177953-187676 bp 3 Locus 3: 238886-249844 bp Zoom in on locus 1 x4 Zoom in on locus 2 Zoom in on locus 3 CRISPR array Location: 97941-98167 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 97941-98167 bp Num of repeats: 4 Spacers: s1-s3 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 177953-179062 bp Gene: cas14:cas14 Type: Type-V Location: 179215-180387 bp Gene: unk Type: unknown Location: 180415-180873 bp Gene: pfam01881:cas6 Type: other Location: 181187-181924 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 181929-183395 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 183415-184428 bp Gene: cd09693:cas5 Type: Type-I Location: 184444-185241 bp Gene: cd09641:cas3HD Type: Type-I Location: 185268-187676 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 238886-239371 bp Gene: cd06127:DEDDh Type: Type-I Location: 246174-247220 bp Gene: unk Type: unknown Location: 247592-248098 bp Gene: unk Type: unknown Location: 248511-249179 bp Gene: cd06127:DEDDh Type: Type-I Location: 249338-249844 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 97941-98167 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADDF010000009.1 Clostridioides difficile strain LSHTM-86 genome assembly, contig: ERS139971SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 185240 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164259-164678 bp Zoom in on locus 1 x7 CRISPR array Location: 164259-164678 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 164259-164678 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 164259-164678 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)