CRISPRone

CRISPRone report for GCA_900691155.1_9119_3_45

♦ Seq 1: CAADDG010000041.1 Clostridioides difficile strain MON005 genome assembly, contig: ERS188520SCcontig000041, whole genome shotgun sequence

⇒Summary: seq-len = 16759 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 668-6487 bp Zoom in on locus 1 x13 x6 x6 CRISPR array Location: 668-1492 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 668-1492 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 4052-4415 bp Num of repeats: 6 Spacers: s13-s17 CRISPR array Location: 4052-4415 bp Num of repeats: 6 Spacers: s13-s17 CRISPR array Location: 6128-6487 bp Num of repeats: 6 Spacers: s18-s22 CRISPR array Location: 6128-6487 bp Num of repeats: 6 Spacers: s18-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 668-1492 bp]: array | spacers
           [Locus range 4052-4415 bp]: array | spacers
           [Locus range 6128-6487 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADDG010000013.1 Clostridioides difficile strain MON005 genome assembly, contig: ERS188520SCcontig000013, whole genome shotgun sequence

⇒Summary: seq-len = 122094 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 42911-53375 bp Zoom in on locus 1 x14 CRISPR array Location: 42911-43798 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 42911-43798 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09725:cas2 Type: universal Location: 43982-44248 bp Gene: cd09722:cas1 Type: universal Location: 44251-45231 bp Gene: pfam01930:cas4 Type: Type-I Location: 45234-45752 bp Gene: COG1203:cas3 Type: Type-I Location: 45800-48121 bp Gene: cd09693:cas5 Type: Type-I Location: 48132-48833 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48835-49749 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 49751-51601 bp Gene: pfam01881:cas6 Type: other Location: 51607-52344 bp Gene: pfam13280:WYL Type: other Location: 52422-53375 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 42911-43798 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADDG010000003.1 Clostridioides difficile strain MON005 genome assembly, contig: ERS188520SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 295719 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 131060-138916 bp 2 Locus 2: 191560-202514 bp Zoom in on locus 1 Zoom in on locus 2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 131060-132169 bp Gene: pfam01881:cas6 Type: other Location: 132428-133165 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 133170-134636 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 134655-135668 bp Gene: cd09693:cas5 Type: Type-I Location: 135684-136481 bp Gene: cd09641:cas3HD Type: Type-I Location: 136508-138916 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 191560-192045 bp Gene: cd06127:DEDDh Type: Type-I Location: 198861-199898 bp Gene: unk Type: unknown Location: 200262-200768 bp Gene: unk Type: unknown Location: 201181-201849 bp Gene: cd06127:DEDDh Type: Type-I Location: 202008-202514 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADDG010000021.1 Clostridioides difficile strain MON005 genome assembly, contig: ERS188520SCcontig000021, whole genome shotgun sequence

⇒Summary: seq-len = 68372 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21499-23168 bp Zoom in on locus 1 x4 x6 CRISPR array Location: 21499-21723 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 21499-21723 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 22809-23168 bp Num of repeats: 6 Spacers: s4-s8 CRISPR array Location: 22809-23168 bp Num of repeats: 6 Spacers: s4-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 21499-21723 bp]: array | spacers
           [Locus range 22809-23168 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADDG010000002.1 Clostridioides difficile strain MON005 genome assembly, contig: ERS188520SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 320648 bp; # of CRISPR array = 1; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 228396-238714 bp Zoom in on locus 1 x14 CRISPR array Location: 228396-229281 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 228396-229281 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09718:cas1 Type: universal Location: 236670-238325 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 238337-238714 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 228396-229281 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADDG010000001.1 Clostridioides difficile strain MON005 genome assembly, contig: ERS188520SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 374596 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189253-189347 bp Zoom in on locus 1 x2 CRISPR array Location: 189253-189347 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 189253-189347 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189253-189347 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAADDG010000042.1 Clostridioides difficile strain MON005 genome assembly, contig: ERS188520SCcontig000042, whole genome shotgun sequence

⇒Summary: seq-len = 17371 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15264-16319 bp Zoom in on locus 1 x5 x3 CRISPR array Location: 15264-15553 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 15264-15553 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 16157-16319 bp Num of repeats: 3 Spacers: s5-s6 CRISPR array Location: 16157-16319 bp Num of repeats: 3 Spacers: s5-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 15264-15553 bp]: array | spacers
           [Locus range 16157-16319 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: CAADDG010000005.1 Clostridioides difficile strain MON005 genome assembly, contig: ERS188520SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 183635 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110252-110346 bp Zoom in on locus 1 x2 CRISPR array Location: 110252-110346 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 110252-110346 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110252-110346 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)