CRISPRone

CRISPRone report for GCA_900691745.1_9221_1_22

♦ Seq 1: CAADDI010000002.1 Clostridioides difficile strain BIR039 genome assembly, contig: ERS188593SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 293974 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189266-189893 bp Zoom in on locus 1 x10 CRISPR array Location: 189266-189893 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 189266-189893 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189266-189893 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADDI010000003.1 Clostridioides difficile strain BIR039 genome assembly, contig: ERS188593SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 276543 bp; # of CRISPR array = 0; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 108564-115052 bp 2 Locus 2: 167655-178608 bp Zoom in on locus 1 Zoom in on locus 2 Gene: pfam01881:cas6 Type: other Location: 108564-109301 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 109306-110772 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 110791-111804 bp Gene: cd09693:cas5 Type: Type-I Location: 111820-112617 bp Gene: cd09641:cas3HD Type: Type-I Location: 112644-115052 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 167655-168140 bp Gene: cd06127:DEDDh Type: Type-I Location: 174955-175992 bp Gene: unk Type: unknown Location: 176356-176862 bp Gene: unk Type: unknown Location: 177275-177943 bp Gene: cd06127:DEDDh Type: Type-I Location: 178102-178608 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADDI010000001.1 Clostridioides difficile strain BIR039 genome assembly, contig: ERS188593SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 427775 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 331578-343559 bp 2 Locus 2: 381062-381875 bp Zoom in on locus 1 x39 Zoom in on locus 2 x13 CRISPR array Location: 331578-334113 bp Num of repeats: 39 Spacers: s1-s38 CRISPR array Location: 331578-334113 bp Num of repeats: 39 Spacers: s1-s38 Gene: cd09718:cas1 Type: universal Location: 341515-343170 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 343182-343559 bp CRISPR array Location: 381062-381875 bp Num of repeats: 13 Spacers: s39-s50 CRISPR array Location: 381062-381875 bp Num of repeats: 13 Spacers: s39-s50 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 331578-334113 bp]: array | spacers
           [Locus range 381062-381875 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADDI010000014.1 Clostridioides difficile strain BIR039 genome assembly, contig: ERS188593SCcontig000014, whole genome shotgun sequence

⇒Summary: seq-len = 140800 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 67409-79062 bp Zoom in on locus 1 x40 Gene: cd09652:cas6 Type: other Location: 67409-68104 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 68116-69855 bp Gene: pfam05107:cas7b Type: Type-I Location: 69848-70837 bp Gene: cd09693:cas5 Type: Type-I Location: 70839-71579 bp Gene: cd09641:cas3HD Type: Type-I Location: 71603-74161 bp CRISPR array Location: 74351-76950 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 74351-76950 bp Num of repeats: 40 Spacers: s1-s39 Gene: pfam01930:cas4 Type: Type-I Location: 77034-77528 bp Gene: cd09722:cas1 Type: universal Location: 77554-78561 bp Gene: cd09725:cas2 Type: universal Location: 78772-79062 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 74351-76950 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADDI010000011.1 Clostridioides difficile strain BIR039 genome assembly, contig: ERS188593SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 147302 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9816-21515 bp Zoom in on locus 1 x33 Gene: pfam13280:WYL Type: other Location: 9816-10769 bp Gene: pfam01881:cas6 Type: other Location: 10847-11584 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 11590-13440 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13442-14356 bp Gene: cd09693:cas5 Type: Type-I Location: 14358-15059 bp Gene: COG1203:cas3 Type: Type-I Location: 15070-17391 bp Gene: pfam01930:cas4 Type: Type-I Location: 17406-17957 bp Gene: cd09722:cas1 Type: universal Location: 17960-18940 bp Gene: cd09725:cas2 Type: universal Location: 18943-19209 bp CRISPR array Location: 19393-21515 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 19393-21515 bp Num of repeats: 33 Spacers: s1-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19393-21515 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADDI010000020.1 Clostridioides difficile strain BIR039 genome assembly, contig: ERS188593SCcontig000020, whole genome shotgun sequence

⇒Summary: seq-len = 76026 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 73295-74443 bp Zoom in on locus 1 x18 CRISPR array Location: 73295-74443 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 73295-74443 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 73295-74443 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)