CRISPRone

CRISPRone report for GCA_900691755.1_9221_1_25

♦ Seq 1: CAADDJ010000003.1 Clostridioides difficile strain BIR042 genome assembly, contig: ERS188596SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 295295 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104083-104709 bp Zoom in on locus 1 x10 CRISPR array Location: 104083-104709 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 104083-104709 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 104083-104709 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADDJ010000002.1 Clostridioides difficile strain BIR042 genome assembly, contig: ERS188596SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 422584 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88687-97014 bp 2 Locus 2: 149617-160570 bp Zoom in on locus 1 Zoom in on locus 2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 88687-89796 bp Gene: unk Type: unknown Location: 90249-90425 bp Gene: pfam01881:cas6 Type: other Location: 90526-91263 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 91268-92734 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 92753-93766 bp Gene: cd09693:cas5 Type: Type-I Location: 93782-94579 bp Gene: cd09641:cas3HD Type: Type-I Location: 94606-97014 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 149617-150102 bp Gene: cd06127:DEDDh Type: Type-I Location: 156917-157954 bp Gene: unk Type: unknown Location: 158318-158824 bp Gene: unk Type: unknown Location: 159237-159905 bp Gene: cd06127:DEDDh Type: Type-I Location: 160064-160570 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADDJ010000001.1 Clostridioides difficile strain BIR042 genome assembly, contig: ERS188596SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 719212 bp; # of CRISPR array = 3; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 481536-493846 bp 2 Locus 2: 531349-532162 bp 3 Locus 3: 640151-651804 bp Zoom in on locus 1 x44 Zoom in on locus 2 x13 Zoom in on locus 3 x40 CRISPR array Location: 481536-484400 bp Num of repeats: 44 Spacers: s1-s43 CRISPR array Location: 481536-484400 bp Num of repeats: 44 Spacers: s1-s43 Gene: cd09718:cas1 Type: universal Location: 491802-493457 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 493469-493846 bp CRISPR array Location: 531349-532162 bp Num of repeats: 13 Spacers: s44-s55 CRISPR array Location: 531349-532162 bp Num of repeats: 13 Spacers: s44-s55 Gene: cd09725:cas2 Type: universal Location: 640151-640441 bp Gene: cd09722:cas1 Type: universal Location: 640652-641650 bp Gene: pfam01930:cas4 Type: Type-I Location: 641685-642179 bp CRISPR array Location: 642264-644862 bp Num of repeats: 40 Spacers: s56-s94 CRISPR array Location: 642264-644862 bp Num of repeats: 40 Spacers: s56-s94 Gene: unk Type: unknown Location: 642887-643015 bp Gene: cd09641:cas3HD Type: Type-I Location: 645052-647610 bp Gene: cd09693:cas5 Type: Type-I Location: 647634-648374 bp Gene: pfam05107:cas7b Type: Type-I Location: 648376-649365 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 649358-651097 bp Gene: cd09652:cas6 Type: other Location: 651109-651804 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 481536-484400 bp]: array | spacers
           [Locus range 531349-532162 bp]: array | spacers
           [Locus range 642264-644862 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADDJ010000018.1 Clostridioides difficile strain BIR042 genome assembly, contig: ERS188596SCcontig000018, whole genome shotgun sequence

⇒Summary: seq-len = 65812 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1602-2751 bp Zoom in on locus 1 x18 CRISPR array Location: 1602-2751 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 1602-2751 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1602-2751 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADDJ010000008.1 Clostridioides difficile strain BIR042 genome assembly, contig: ERS188596SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 147380 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125794-137492 bp Zoom in on locus 1 x33 CRISPR array Location: 125794-127915 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 125794-127915 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 128099-128365 bp Gene: cd09722:cas1 Type: universal Location: 128368-129348 bp Gene: pfam01930:cas4 Type: Type-I Location: 129351-129869 bp Gene: COG1203:cas3 Type: Type-I Location: 129917-132238 bp Gene: cd09693:cas5 Type: Type-I Location: 132249-132950 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 132952-133866 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 133868-135718 bp Gene: pfam01881:cas6 Type: other Location: 135724-136461 bp Gene: pfam13280:WYL Type: other Location: 136539-137492 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 125794-127915 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)