CRISPRone

CRISPRone report for GCA_900691805.1_9221_1_32

♦ Seq 1: CAADDK010000001.1 Clostridioides difficile strain FLI001 genome assembly, contig: ERS188603SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 741778 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 257859-258284 bp 2 Locus 2: 420814-429148 bp 3 Locus 3: 502430-502523 bp Zoom in on locus 1 x7 Zoom in on locus 2 Zoom in on locus 3 x2 CRISPR array Location: 257859-258284 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 257859-258284 bp Num of repeats: 7 Spacers: s1-s6 Gene: cd09641:cas3HD Type: Type-I Location: 420814-423222 bp Gene: cd09693:cas5 Type: Type-I Location: 423249-424046 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 424062-425075 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 425095-426561 bp Gene: pfam01881:cas6 Type: other Location: 426566-427303 bp Gene: unk Type: unknown Location: 427404-427580 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 428039-429148 bp CRISPR array Location: 502430-502523 bp Num of repeats: 2 Spacers: s7-s7 CRISPR array Location: 502430-502523 bp Num of repeats: 2 Spacers: s7-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 257859-258284 bp]: array | spacers
           [Locus range 502430-502523 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADDK010000003.1 Clostridioides difficile strain FLI001 genome assembly, contig: ERS188603SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 356330 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 102488-102650 bp Zoom in on locus 1 x3 CRISPR array Location: 102488-102650 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 102488-102650 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 102488-102650 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADDK010000004.1 Clostridioides difficile strain FLI001 genome assembly, contig: ERS188603SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 316743 bp; # of CRISPR array = 6; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18005-18629 bp 2 Locus 2: 110242-114119 bp 3 Locus 3: 252051-253070 bp Zoom in on locus 1 x10 Zoom in on locus 2 x2 x6 x14 x2 Zoom in on locus 3 x16 CRISPR array Location: 18005-18629 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 18005-18629 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 110242-110335 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 110242-110335 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 110396-110754 bp Num of repeats: 6 Spacers: s11-s15 CRISPR array Location: 110396-110754 bp Num of repeats: 6 Spacers: s11-s15 CRISPR array Location: 111356-112243 bp Num of repeats: 14 Spacers: s16-s28 CRISPR array Location: 111356-112243 bp Num of repeats: 14 Spacers: s16-s28 CRISPR array Location: 114024-114119 bp Num of repeats: 2 Spacers: s29-s29 CRISPR array Location: 114024-114119 bp Num of repeats: 2 Spacers: s29-s29 CRISPR array Location: 252051-253070 bp Num of repeats: 16 Spacers: s30-s44 CRISPR array Location: 252051-253070 bp Num of repeats: 16 Spacers: s30-s44 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18005-18629 bp]: array | spacers
           [Locus range 110242-110335 bp]: array | spacers
           [Locus range 110396-110754 bp]: array | spacers
           [Locus range 111356-112243 bp]: array | spacers
           [Locus range 114024-114119 bp]: array | spacers
           [Locus range 252051-253070 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADDK010000010.1 Clostridioides difficile strain FLI001 genome assembly, contig: ERS188603SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 212754 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90948-91439 bp Zoom in on locus 1 x8 CRISPR array Location: 90948-91439 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 90948-91439 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90948-91439 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADDK010000006.1 Clostridioides difficile strain FLI001 genome assembly, contig: ERS188603SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 274457 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 187832-188057 bp Zoom in on locus 1 x4 CRISPR array Location: 187832-188057 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 187832-188057 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 187832-188057 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)