CRISPRone

CRISPRone report for GCA_900691815.1_9221_1_34

♦ Seq 1: CAADDV010000001.1 Clostridioides difficile strain FLI003 genome assembly, contig: ERS188605SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 483500 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 242201-242295 bp 2 Locus 2: 315576-323910 bp Zoom in on locus 1 x2 Zoom in on locus 2 CRISPR array Location: 242201-242295 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 242201-242295 bp Num of repeats: 2 Spacers: s1-s1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 315576-316685 bp Gene: unk Type: unknown Location: 317144-317320 bp Gene: pfam01881:cas6 Type: other Location: 317421-318158 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 318163-319629 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 319649-320662 bp Gene: cd09693:cas5 Type: Type-I Location: 320678-321475 bp Gene: cd09641:cas3HD Type: Type-I Location: 321502-323910 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 242201-242295 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADDV010000003.1 Clostridioides difficile strain FLI003 genome assembly, contig: ERS188605SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 355230 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252520-252681 bp Zoom in on locus 1 x3 CRISPR array Location: 252520-252681 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 252520-252681 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 252520-252681 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADDV010000005.1 Clostridioides difficile strain FLI003 genome assembly, contig: ERS188605SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 272660 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86402-86626 bp Zoom in on locus 1 x4 CRISPR array Location: 86402-86626 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 86402-86626 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 86402-86626 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADDV010000004.1 Clostridioides difficile strain FLI003 genome assembly, contig: ERS188605SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 313205 bp; # of CRISPR array = 6; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18073-18697 bp 2 Locus 2: 110310-114187 bp 3 Locus 3: 248589-249608 bp Zoom in on locus 1 x10 Zoom in on locus 2 x2 x6 x14 x2 Zoom in on locus 3 x16 CRISPR array Location: 18073-18697 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 18073-18697 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 110310-110403 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 110310-110403 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 110464-110822 bp Num of repeats: 6 Spacers: s11-s15 CRISPR array Location: 110464-110822 bp Num of repeats: 6 Spacers: s11-s15 CRISPR array Location: 111424-112311 bp Num of repeats: 14 Spacers: s16-s28 CRISPR array Location: 111424-112311 bp Num of repeats: 14 Spacers: s16-s28 CRISPR array Location: 114092-114187 bp Num of repeats: 2 Spacers: s29-s29 CRISPR array Location: 114092-114187 bp Num of repeats: 2 Spacers: s29-s29 CRISPR array Location: 248589-249608 bp Num of repeats: 16 Spacers: s30-s44 CRISPR array Location: 248589-249608 bp Num of repeats: 16 Spacers: s30-s44 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18073-18697 bp]: array | spacers
           [Locus range 110310-110403 bp]: array | spacers
           [Locus range 110464-110822 bp]: array | spacers
           [Locus range 111424-112311 bp]: array | spacers
           [Locus range 114092-114187 bp]: array | spacers
           [Locus range 248589-249608 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADDV010000009.1 Clostridioides difficile strain FLI003 genome assembly, contig: ERS188605SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 211502 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90873-91364 bp Zoom in on locus 1 x8 CRISPR array Location: 90873-91364 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 90873-91364 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90873-91364 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADDV010000006.1 Clostridioides difficile strain FLI003 genome assembly, contig: ERS188605SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 260058 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2894-3320 bp Zoom in on locus 1 x7 CRISPR array Location: 2894-3320 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 2894-3320 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2894-3320 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)