CRISPRone

CRISPRone report for GCA_900691835.1_9221_1_33

♦ Seq 1: CAADDW010000004.1 Clostridioides difficile strain FLI002 genome assembly, contig: ERS188604SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 355332 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252599-252760 bp Zoom in on locus 1 x3 CRISPR array Location: 252599-252760 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 252599-252760 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 252599-252760 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADDW010000002.1 Clostridioides difficile strain FLI002 genome assembly, contig: ERS188604SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 487426 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90904-91395 bp 2 Locus 2: 299418-299642 bp Zoom in on locus 1 x8 Zoom in on locus 2 x4 CRISPR array Location: 90904-91395 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 90904-91395 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 299418-299642 bp Num of repeats: 4 Spacers: s8-s10 CRISPR array Location: 299418-299642 bp Num of repeats: 4 Spacers: s8-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90904-91395 bp]: array | spacers
           [Locus range 299418-299642 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADDW010000001.1 Clostridioides difficile strain FLI002 genome assembly, contig: ERS188604SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 744710 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 257846-258271 bp 2 Locus 2: 420801-429135 bp 3 Locus 3: 502417-502510 bp Zoom in on locus 1 x7 Zoom in on locus 2 Zoom in on locus 3 x2 CRISPR array Location: 257846-258271 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 257846-258271 bp Num of repeats: 7 Spacers: s1-s6 Gene: cd09641:cas3HD Type: Type-I Location: 420801-423209 bp Gene: cd09693:cas5 Type: Type-I Location: 423236-424033 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 424049-425062 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 425082-426548 bp Gene: pfam01881:cas6 Type: other Location: 426553-427290 bp Gene: unk Type: unknown Location: 427391-427567 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 428026-429135 bp CRISPR array Location: 502417-502510 bp Num of repeats: 2 Spacers: s7-s7 CRISPR array Location: 502417-502510 bp Num of repeats: 2 Spacers: s7-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 257846-258271 bp]: array | spacers
           [Locus range 502417-502510 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADDW010000005.1 Clostridioides difficile strain FLI002 genome assembly, contig: ERS188604SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 313784 bp; # of CRISPR array = 6; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63631-64649 bp 2 Locus 2: 199052-202928 bp 3 Locus 3: 294542-295165 bp Zoom in on locus 1 x16 Zoom in on locus 2 x2 x14 x6 x2 Zoom in on locus 3 x10 CRISPR array Location: 63631-64649 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 63631-64649 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 199052-199146 bp Num of repeats: 2 Spacers: s16-s16 CRISPR array Location: 199052-199146 bp Num of repeats: 2 Spacers: s16-s16 CRISPR array Location: 200928-201814 bp Num of repeats: 14 Spacers: s17-s29 CRISPR array Location: 200928-201814 bp Num of repeats: 14 Spacers: s17-s29 CRISPR array Location: 202417-202774 bp Num of repeats: 6 Spacers: s30-s34 CRISPR array Location: 202417-202774 bp Num of repeats: 6 Spacers: s30-s34 CRISPR array Location: 202836-202928 bp Num of repeats: 2 Spacers: s35-s35 CRISPR array Location: 202836-202928 bp Num of repeats: 2 Spacers: s35-s35 CRISPR array Location: 294542-295165 bp Num of repeats: 10 Spacers: s36-s44 CRISPR array Location: 294542-295165 bp Num of repeats: 10 Spacers: s36-s44 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63631-64649 bp]: array | spacers
           [Locus range 199052-199146 bp]: array | spacers
           [Locus range 200928-201814 bp]: array | spacers
           [Locus range 202417-202774 bp]: array | spacers
           [Locus range 202836-202928 bp]: array | spacers
           [Locus range 294542-295165 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)