CRISPRone

CRISPRone report for GCA_900691855.1_9221_1_41

♦ Seq 1: CAADDN010000001.1 Clostridioides difficile strain FLI010 genome assembly, contig: ERS188612SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1004498 bp; # of CRISPR array = 6; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190298-190725 bp 2 Locus 2: 394259-394681 bp 3 Locus 3: 511030-511789 bp 4 Locus 4: 638626-640601 bp 5 Locus 5: 796464-798136 bp Zoom in on locus 1 x7 Zoom in on locus 2 x7 Zoom in on locus 3 x12 Zoom in on locus 4 x9 x13 Zoom in on locus 5 x26 CRISPR array Location: 190298-190725 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 190298-190725 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 394259-394681 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 394259-394681 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 511030-511789 bp Num of repeats: 12 Spacers: s13-s23 CRISPR array Location: 511030-511789 bp Num of repeats: 12 Spacers: s13-s23 CRISPR array Location: 638626-639181 bp Num of repeats: 9 Spacers: s24-s31 CRISPR array Location: 638626-639181 bp Num of repeats: 9 Spacers: s24-s31 CRISPR array Location: 639783-640601 bp Num of repeats: 13 Spacers: s32-s43 CRISPR array Location: 639783-640601 bp Num of repeats: 13 Spacers: s32-s43 CRISPR array Location: 796464-798136 bp Num of repeats: 26 Spacers: s44-s68 CRISPR array Location: 796464-798136 bp Num of repeats: 26 Spacers: s44-s68 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190298-190725 bp]: array | spacers
           [Locus range 394259-394681 bp]: array | spacers
           [Locus range 511030-511789 bp]: array | spacers
           [Locus range 638626-639181 bp]: array | spacers
           [Locus range 639783-640601 bp]: array | spacers
           [Locus range 796464-798136 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADDN010000003.1 Clostridioides difficile strain FLI010 genome assembly, contig: ERS188612SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 542659 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 498761-498854 bp Zoom in on locus 1 x2 CRISPR array Location: 498761-498854 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 498761-498854 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 498761-498854 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADDN010000008.1 Clostridioides difficile strain FLI010 genome assembly, contig: ERS188612SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 230369 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 140455-140680 bp Zoom in on locus 1 x4 CRISPR array Location: 140455-140680 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 140455-140680 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 140455-140680 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADDN010000002.1 Clostridioides difficile strain FLI010 genome assembly, contig: ERS188612SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 740496 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 240359-240916 bp 2 Locus 2: 315136-323001 bp 3 Locus 3: 488758-488985 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x4 CRISPR array Location: 240359-240916 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 240359-240916 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 315136-316245 bp Gene: pfam01881:cas6 Type: other Location: 316503-317240 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 317245-318720 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 318740-319753 bp Gene: cd09693:cas5 Type: Type-I Location: 319769-320566 bp Gene: cd09641:cas3HD Type: Type-I Location: 320593-323001 bp CRISPR array Location: 488758-488985 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 488758-488985 bp Num of repeats: 4 Spacers: s9-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 240359-240916 bp]: array | spacers
           [Locus range 488758-488985 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)