CRISPRone

CRISPRone report for GCA_900691875.1_9221_1_37

♦ Seq 1: CAADDL010000005.1 Clostridioides difficile strain FLI006 genome assembly, contig: ERS188608SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 283706 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 162758-162918 bp Zoom in on locus 1 x3 CRISPR array Location: 162758-162918 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 162758-162918 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 162758-162918 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADDL010000003.1 Clostridioides difficile strain FLI006 genome assembly, contig: ERS188608SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 334013 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 84981-89474 bp 2 Locus 2: 247295-248049 bp Zoom in on locus 1 x4 x4 x8 Zoom in on locus 2 x12 CRISPR array Location: 84981-85208 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 84981-85208 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 86891-87117 bp Num of repeats: 4 Spacers: s4-s6 CRISPR array Location: 86891-87117 bp Num of repeats: 4 Spacers: s4-s6 CRISPR array Location: 88979-89474 bp Num of repeats: 8 Spacers: s7-s13 CRISPR array Location: 88979-89474 bp Num of repeats: 8 Spacers: s7-s13 CRISPR array Location: 247295-248049 bp Num of repeats: 12 Spacers: s14-s24 CRISPR array Location: 247295-248049 bp Num of repeats: 12 Spacers: s14-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 84981-85208 bp]: array | spacers
           [Locus range 86891-87117 bp]: array | spacers
           [Locus range 88979-89474 bp]: array | spacers
           [Locus range 247295-248049 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADDL010000002.1 Clostridioides difficile strain FLI006 genome assembly, contig: ERS188608SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 374890 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44385-44743 bp 2 Locus 2: 118025-126346 bp 3 Locus 3: 289618-290235 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 44385-44743 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 44385-44743 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 118025-119134 bp Gene: unk Type: unknown Location: 119568-119744 bp Gene: pfam01881:cas6 Type: other Location: 119845-120582 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 120587-122062 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 122082-123098 bp Gene: cd09693:cas5 Type: Type-I Location: 123114-123911 bp Gene: cd09641:cas3HD Type: Type-I Location: 123938-126346 bp CRISPR array Location: 289618-290235 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 289618-290235 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44385-44743 bp]: array | spacers
           [Locus range 289618-290235 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADDL010000007.1 Clostridioides difficile strain FLI006 genome assembly, contig: ERS188608SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 216192 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124143-124702 bp Zoom in on locus 1 x9 CRISPR array Location: 124143-124702 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 124143-124702 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124143-124702 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADDL010000018.1 Clostridioides difficile strain FLI006 genome assembly, contig: ERS188608SCcontig000018, whole genome shotgun sequence

⇒Summary: seq-len = 67893 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3473-4295 bp Zoom in on locus 1 x13 CRISPR array Location: 3473-4295 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 3473-4295 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3473-4295 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADDL010000011.1 Clostridioides difficile strain FLI006 genome assembly, contig: ERS188608SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 191848 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17865-18491 bp Zoom in on locus 1 x10 CRISPR array Location: 17865-18491 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 17865-18491 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17865-18491 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAADDL010000001.1 Clostridioides difficile strain FLI006 genome assembly, contig: ERS188608SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 530539 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252657-263664 bp 2 Locus 2: 485850-485943 bp Zoom in on locus 1 x23 Zoom in on locus 2 x2 CRISPR array Location: 252657-254126 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 252657-254126 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09725:cas2 Type: universal Location: 254310-254576 bp Gene: cd09722:cas1 Type: universal Location: 254579-255559 bp Gene: pfam01930:cas4 Type: Type-I Location: 255562-256080 bp Gene: COG1203:cas3 Type: Type-I Location: 256128-258449 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258460-259161 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259163-260077 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 260079-261929 bp Gene: pfam01881:cas6 Type: other Location: 261935-262729 bp Gene: pfam13280:WYL Type: other Location: 262750-263664 bp CRISPR array Location: 485850-485943 bp Num of repeats: 2 Spacers: s23-s23 CRISPR array Location: 485850-485943 bp Num of repeats: 2 Spacers: s23-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252657-254126 bp]: array | spacers
           [Locus range 485850-485943 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)