CRISPRone

CRISPRone report for GCA_900691885.1_9221_1_42

♦ Seq 1: CAADDM010000007.1 Clostridioides difficile strain FLI011 genome assembly, contig: ERS188613SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 230313 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 89616-89842 bp Zoom in on locus 1 x4 CRISPR array Location: 89616-89842 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 89616-89842 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 89616-89842 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADDM010000002.1 Clostridioides difficile strain FLI011 genome assembly, contig: ERS188613SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 563339 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 77921-78679 bp 2 Locus 2: 195029-195450 bp 3 Locus 3: 398985-399411 bp Zoom in on locus 1 x12 Zoom in on locus 2 x7 Zoom in on locus 3 x7 CRISPR array Location: 77921-78679 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 77921-78679 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 195029-195450 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 195029-195450 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 398985-399411 bp Num of repeats: 7 Spacers: s18-s23 CRISPR array Location: 398985-399411 bp Num of repeats: 7 Spacers: s18-s23 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 77921-78679 bp]: array | spacers
           [Locus range 195029-195450 bp]: array | spacers
           [Locus range 398985-399411 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADDM010000001.1 Clostridioides difficile strain FLI011 genome assembly, contig: ERS188613SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1248017 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 499075-499168 bp 2 Locus 2: 794880-795106 bp 3 Locus 3: 960863-968728 bp 4 Locus 4: 1042949-1043505 bp Zoom in on locus 1 x2 Zoom in on locus 2 x4 Zoom in on locus 3 Zoom in on locus 4 x9 CRISPR array Location: 499075-499168 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 499075-499168 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 794880-795106 bp Num of repeats: 4 Spacers: s2-s4 CRISPR array Location: 794880-795106 bp Num of repeats: 4 Spacers: s2-s4 Gene: cd09641:cas3HD Type: Type-I Location: 960863-963271 bp Gene: cd09693:cas5 Type: Type-I Location: 963298-964095 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 964111-965124 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 965144-966619 bp Gene: pfam01881:cas6 Type: other Location: 966624-967361 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 967619-968728 bp CRISPR array Location: 1042949-1043505 bp Num of repeats: 9 Spacers: s5-s12 CRISPR array Location: 1042949-1043505 bp Num of repeats: 9 Spacers: s5-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 499075-499168 bp]: array | spacers
           [Locus range 794880-795106 bp]: array | spacers
           [Locus range 1042949-1043505 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADDM010000003.1 Clostridioides difficile strain FLI011 genome assembly, contig: ERS188613SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 390540 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 232569-234308 bp 2 Locus 2: 380289-382263 bp Zoom in on locus 1 x27 Zoom in on locus 2 x13 x9 CRISPR array Location: 232569-234308 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 232569-234308 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 380289-381106 bp Num of repeats: 13 Spacers: s27-s38 CRISPR array Location: 380289-381106 bp Num of repeats: 13 Spacers: s27-s38 CRISPR array Location: 381709-382263 bp Num of repeats: 9 Spacers: s39-s46 CRISPR array Location: 381709-382263 bp Num of repeats: 9 Spacers: s39-s46 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 232569-234308 bp]: array | spacers
           [Locus range 380289-381106 bp]: array | spacers
           [Locus range 381709-382263 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)