CRISPRone

CRISPRone report for GCA_900691915.1_9221_1_44

♦ Seq 1: CAADDO010000006.1 Clostridioides difficile strain FLI013 genome assembly, contig: ERS188615SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 230361 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 140449-140674 bp Zoom in on locus 1 x4 CRISPR array Location: 140449-140674 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 140449-140674 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 140449-140674 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADDO010000022.1 Clostridioides difficile strain FLI013 genome assembly, contig: ERS188615SCcontig000022, whole genome shotgun sequence

⇒Summary: seq-len = 22467 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10712-12687 bp Zoom in on locus 1 x9 x13 CRISPR array Location: 10712-11267 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 10712-11267 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 11869-12687 bp Num of repeats: 13 Spacers: s9-s20 CRISPR array Location: 11869-12687 bp Num of repeats: 13 Spacers: s9-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10712-11267 bp]: array | spacers
           [Locus range 11869-12687 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADDO010000003.1 Clostridioides difficile strain FLI013 genome assembly, contig: ERS188615SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 537402 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 138365-138660 bp 2 Locus 2: 342194-342616 bp 3 Locus 3: 458965-459724 bp Zoom in on locus 1 x5 Zoom in on locus 2 x7 Zoom in on locus 3 x12 CRISPR array Location: 138365-138660 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 138365-138660 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 342194-342616 bp Num of repeats: 7 Spacers: s5-s10 CRISPR array Location: 342194-342616 bp Num of repeats: 7 Spacers: s5-s10 CRISPR array Location: 458965-459724 bp Num of repeats: 12 Spacers: s11-s21 CRISPR array Location: 458965-459724 bp Num of repeats: 12 Spacers: s11-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 138365-138660 bp]: array | spacers
           [Locus range 342194-342616 bp]: array | spacers
           [Locus range 458965-459724 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADDO010000001.1 Clostridioides difficile strain FLI013 genome assembly, contig: ERS188615SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 742841 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 250100-250326 bp 2 Locus 2: 416083-423948 bp 3 Locus 3: 498169-498725 bp Zoom in on locus 1 x4 Zoom in on locus 2 Zoom in on locus 3 x9 CRISPR array Location: 250100-250326 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 250100-250326 bp Num of repeats: 4 Spacers: s1-s3 Gene: cd09641:cas3HD Type: Type-I Location: 416083-418491 bp Gene: cd09693:cas5 Type: Type-I Location: 418518-419315 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 419331-420344 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 420364-421839 bp Gene: pfam01881:cas6 Type: other Location: 421844-422581 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 422839-423948 bp CRISPR array Location: 498169-498725 bp Num of repeats: 9 Spacers: s4-s11 CRISPR array Location: 498169-498725 bp Num of repeats: 9 Spacers: s4-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 250100-250326 bp]: array | spacers
           [Locus range 498169-498725 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADDO010000008.1 Clostridioides difficile strain FLI013 genome assembly, contig: ERS188615SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 176205 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 40324-42063 bp Zoom in on locus 1 x27 CRISPR array Location: 40324-42063 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 40324-42063 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 40324-42063 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADDO010000002.1 Clostridioides difficile strain FLI013 genome assembly, contig: ERS188615SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 543009 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 498750-498843 bp Zoom in on locus 1 x2 CRISPR array Location: 498750-498843 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 498750-498843 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 498750-498843 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)