CRISPRone

CRISPRone report for GCA_900691945.1_9221_1_46

♦ Seq 1: CAADDP010000001.1 Clostridioides difficile strain FLI015 genome assembly, contig: ERS188617SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 706845 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 206492-207049 bp 2 Locus 2: 281269-289134 bp 3 Locus 3: 454891-455118 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x4 CRISPR array Location: 206492-207049 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 206492-207049 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 281269-282378 bp Gene: pfam01881:cas6 Type: other Location: 282636-283373 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 283378-284853 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 284873-285886 bp Gene: cd09693:cas5 Type: Type-I Location: 285902-286699 bp Gene: cd09641:cas3HD Type: Type-I Location: 286726-289134 bp CRISPR array Location: 454891-455118 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 454891-455118 bp Num of repeats: 4 Spacers: s9-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 206492-207049 bp]: array | spacers
           [Locus range 454891-455118 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADDP010000008.1 Clostridioides difficile strain FLI015 genome assembly, contig: ERS188617SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 199809 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 40340-42079 bp 2 Locus 2: 189228-191202 bp Zoom in on locus 1 x27 Zoom in on locus 2 x13 x9 CRISPR array Location: 40340-42079 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 40340-42079 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 189228-190045 bp Num of repeats: 13 Spacers: s27-s38 CRISPR array Location: 189228-190045 bp Num of repeats: 13 Spacers: s27-s38 CRISPR array Location: 190648-191202 bp Num of repeats: 9 Spacers: s39-s46 CRISPR array Location: 190648-191202 bp Num of repeats: 9 Spacers: s39-s46 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 40340-42079 bp]: array | spacers
           [Locus range 189228-190045 bp]: array | spacers
           [Locus range 190648-191202 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADDP010000007.1 Clostridioides difficile strain FLI015 genome assembly, contig: ERS188617SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 230395 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 89706-89932 bp Zoom in on locus 1 x4 CRISPR array Location: 89706-89932 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 89706-89932 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 89706-89932 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADDP010000002.1 Clostridioides difficile strain FLI015 genome assembly, contig: ERS188617SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 542996 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 498961-499054 bp Zoom in on locus 1 x2 CRISPR array Location: 498961-499054 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 498961-499054 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 498961-499054 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADDP010000003.1 Clostridioides difficile strain FLI015 genome assembly, contig: ERS188617SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 539600 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 139587-139882 bp 2 Locus 2: 343416-343838 bp 3 Locus 3: 460187-460946 bp Zoom in on locus 1 x5 Zoom in on locus 2 x7 Zoom in on locus 3 x12 CRISPR array Location: 139587-139882 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 139587-139882 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 343416-343838 bp Num of repeats: 7 Spacers: s5-s10 CRISPR array Location: 343416-343838 bp Num of repeats: 7 Spacers: s5-s10 CRISPR array Location: 460187-460946 bp Num of repeats: 12 Spacers: s11-s21 CRISPR array Location: 460187-460946 bp Num of repeats: 12 Spacers: s11-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 139587-139882 bp]: array | spacers
           [Locus range 343416-343838 bp]: array | spacers
           [Locus range 460187-460946 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)