CRISPRone

CRISPRone report for GCA_900691955.1_9221_1_47

♦ Seq 1: CAADDQ010000004.1 Clostridioides difficile strain FLI016 genome assembly, contig: ERS188618SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 398931 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 132156-143338 bp Zoom in on locus 1 x26 Gene: pfam13280:WYL Type: other Location: 132156-133043 bp Gene: pfam01881:cas6 Type: other Location: 133121-133858 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 133864-135714 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 135716-136630 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 136632-137333 bp Gene: COG1203:cas3 Type: Type-I Location: 137344-139665 bp Gene: pfam01930:cas4 Type: Type-I Location: 139680-140231 bp Gene: cd09722:cas1 Type: universal Location: 140234-141214 bp Gene: cd09725:cas2 Type: universal Location: 141217-141483 bp CRISPR array Location: 141667-143338 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 141667-143338 bp Num of repeats: 26 Spacers: s1-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 141667-143338 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADDQ010000003.1 Clostridioides difficile strain FLI016 genome assembly, contig: ERS188618SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 493171 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 195663-196283 bp 2 Locus 2: 401887-402243 bp Zoom in on locus 1 x10 Zoom in on locus 2 x6 CRISPR array Location: 195663-196283 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 195663-196283 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 401887-402243 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 401887-402243 bp Num of repeats: 6 Spacers: s10-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 195663-196283 bp]: array | spacers
           [Locus range 401887-402243 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADDQ010000002.1 Clostridioides difficile strain FLI016 genome assembly, contig: ERS188618SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 660341 bp; # of CRISPR array = 3; # of cas gene = 11  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62016-69298 bp 2 Locus 2: 366551-367632 bp 3 Locus 3: 533070-540935 bp 4 Locus 4: 614205-614563 bp Zoom in on locus 1 x17 Zoom in on locus 2 x17 Zoom in on locus 3 Zoom in on locus 4 x6 CRISPR array Location: 62016-63095 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 62016-63095 bp Num of repeats: 17 Spacers: s1-s16 Gene: COG1203:cas3 Type: Type-I Location: 63662-65644 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 65655-66725 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 66746-67894 bp Gene: pfam01881:cas6 Type: other Location: 67896-68660 bp Gene: cd09693:cas5 Type: Type-I Location: 68651-69298 bp CRISPR array Location: 366551-367632 bp Num of repeats: 17 Spacers: s17-s32 CRISPR array Location: 366551-367632 bp Num of repeats: 17 Spacers: s17-s32 Gene: cd09641:cas3HD Type: Type-I Location: 533070-535478 bp Gene: cd09693:cas5 Type: Type-I Location: 535505-536302 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 536318-537331 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 537351-538826 bp Gene: pfam01881:cas6 Type: other Location: 538831-539568 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 539826-540935 bp CRISPR array Location: 614205-614563 bp Num of repeats: 6 Spacers: s33-s37 CRISPR array Location: 614205-614563 bp Num of repeats: 6 Spacers: s33-s37 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 62016-63095 bp]: array | spacers
           [Locus range 366551-367632 bp]: array | spacers
           [Locus range 614205-614563 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADDQ010000001.1 Clostridioides difficile strain FLI016 genome assembly, contig: ERS188618SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 986955 bp; # of CRISPR array = 6; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 87774-89422 bp 2 Locus 2: 179687-180309 bp 3 Locus 3: 198084-201091 bp 4 Locus 4: 259607-261346 bp 5 Locus 5: 576189-576414 bp 6 Locus 6: 622085-623494 bp Zoom in on locus 1 x14 x3 Zoom in on locus 2 x10 Zoom in on locus 3 Zoom in on locus 4 x27 Zoom in on locus 5 x4 Zoom in on locus 6 x22 CRISPR array Location: 87774-88659 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 87774-88659 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 89262-89422 bp Num of repeats: 3 Spacers: s14-s15 CRISPR array Location: 89262-89422 bp Num of repeats: 3 Spacers: s14-s15 CRISPR array Location: 179687-180309 bp Num of repeats: 10 Spacers: s16-s24 CRISPR array Location: 179687-180309 bp Num of repeats: 10 Spacers: s16-s24 Gene: cas14:cas14 Type: Type-V Location: 198084-198839 bp Gene: unk Type: unknown Location: 198841-198987 bp Gene: unk Type: unknown Location: 199003-200547 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 200723-201091 bp CRISPR array Location: 259607-261346 bp Num of repeats: 27 Spacers: s25-s50 CRISPR array Location: 259607-261346 bp Num of repeats: 27 Spacers: s25-s50 CRISPR array Location: 576189-576414 bp Num of repeats: 4 Spacers: s51-s53 CRISPR array Location: 576189-576414 bp Num of repeats: 4 Spacers: s51-s53 CRISPR array Location: 622085-623494 bp Num of repeats: 22 Spacers: s54-s74 CRISPR array Location: 622085-623494 bp Num of repeats: 22 Spacers: s54-s74 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 87774-88659 bp]: array | spacers
           [Locus range 89262-89422 bp]: array | spacers
           [Locus range 179687-180309 bp]: array | spacers
           [Locus range 259607-261346 bp]: array | spacers
           [Locus range 576189-576414 bp]: array | spacers
           [Locus range 622085-623494 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)