CRISPRone

CRISPRone report for GCA_900691975.1_9221_1_35

♦ Seq 1: CAADDR010000003.1 Clostridioides difficile strain FLI004 genome assembly, contig: ERS188606SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 272394 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86402-86626 bp Zoom in on locus 1 x4 CRISPR array Location: 86402-86626 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 86402-86626 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 86402-86626 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADDR010000008.1 Clostridioides difficile strain FLI004 genome assembly, contig: ERS188606SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 175801 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63612-64630 bp Zoom in on locus 1 x16 CRISPR array Location: 63612-64630 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 63612-64630 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63612-64630 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADDR010000011.1 Clostridioides difficile strain FLI004 genome assembly, contig: ERS188606SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 139391 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25538-29414 bp 2 Locus 2: 121028-121651 bp Zoom in on locus 1 x2 x14 x6 x2 Zoom in on locus 2 x10 CRISPR array Location: 25538-25632 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 25538-25632 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 27414-28300 bp Num of repeats: 14 Spacers: s2-s14 CRISPR array Location: 27414-28300 bp Num of repeats: 14 Spacers: s2-s14 CRISPR array Location: 28903-29260 bp Num of repeats: 6 Spacers: s15-s19 CRISPR array Location: 28903-29260 bp Num of repeats: 6 Spacers: s15-s19 CRISPR array Location: 29322-29414 bp Num of repeats: 2 Spacers: s20-s20 CRISPR array Location: 29322-29414 bp Num of repeats: 2 Spacers: s20-s20 CRISPR array Location: 121028-121651 bp Num of repeats: 10 Spacers: s21-s29 CRISPR array Location: 121028-121651 bp Num of repeats: 10 Spacers: s21-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 25538-25632 bp]: array | spacers
           [Locus range 27414-28300 bp]: array | spacers
           [Locus range 28903-29260 bp]: array | spacers
           [Locus range 29322-29414 bp]: array | spacers
           [Locus range 121028-121651 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADDR010000001.1 Clostridioides difficile strain FLI004 genome assembly, contig: ERS188606SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1097451 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252571-252732 bp 2 Locus 2: 613269-613694 bp 3 Locus 3: 776224-784558 bp 4 Locus 4: 857840-857933 bp Zoom in on locus 1 x3 Zoom in on locus 2 x7 Zoom in on locus 3 Zoom in on locus 4 x2 CRISPR array Location: 252571-252732 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 252571-252732 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 613269-613694 bp Num of repeats: 7 Spacers: s3-s8 CRISPR array Location: 613269-613694 bp Num of repeats: 7 Spacers: s3-s8 Gene: cd09641:cas3HD Type: Type-I Location: 776224-778632 bp Gene: cd09693:cas5 Type: Type-I Location: 778659-779456 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 779472-780485 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 780505-781971 bp Gene: pfam01881:cas6 Type: other Location: 781976-782713 bp Gene: unk Type: unknown Location: 782814-782990 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 783449-784558 bp CRISPR array Location: 857840-857933 bp Num of repeats: 2 Spacers: s9-s9 CRISPR array Location: 857840-857933 bp Num of repeats: 2 Spacers: s9-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252571-252732 bp]: array | spacers
           [Locus range 613269-613694 bp]: array | spacers
           [Locus range 857840-857933 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADDR010000007.1 Clostridioides difficile strain FLI004 genome assembly, contig: ERS188606SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 212785 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90883-91374 bp Zoom in on locus 1 x8 CRISPR array Location: 90883-91374 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 90883-91374 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90883-91374 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)