CRISPRone

CRISPRone report for GCA_900691985.1_9221_1_90

♦ Seq 1: CAADDS010000019.1 Clostridioides difficile strain 20120077 genome assembly, contig: ERS188661SCcontig000019, whole genome shotgun sequence

⇒Summary: seq-len = 76062 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1602-2751 bp Zoom in on locus 1 x18 CRISPR array Location: 1602-2751 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 1602-2751 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1602-2751 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADDS010000001.1 Clostridioides difficile strain 20120077 genome assembly, contig: ERS188661SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 464931 bp; # of CRISPR array = 3; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 227262-239572 bp 2 Locus 2: 277075-277888 bp 3 Locus 3: 385877-397530 bp Zoom in on locus 1 x44 Zoom in on locus 2 x13 Zoom in on locus 3 x40 CRISPR array Location: 227262-230126 bp Num of repeats: 44 Spacers: s1-s43 CRISPR array Location: 227262-230126 bp Num of repeats: 44 Spacers: s1-s43 Gene: cd09718:cas1 Type: universal Location: 237528-239183 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 239195-239572 bp CRISPR array Location: 277075-277888 bp Num of repeats: 13 Spacers: s44-s55 CRISPR array Location: 277075-277888 bp Num of repeats: 13 Spacers: s44-s55 Gene: cd09725:cas2 Type: universal Location: 385877-386167 bp Gene: cd09722:cas1 Type: universal Location: 386378-387385 bp Gene: pfam01930:cas4 Type: Type-I Location: 387411-387905 bp CRISPR array Location: 387990-390588 bp Num of repeats: 40 Spacers: s56-s94 CRISPR array Location: 387990-390588 bp Num of repeats: 40 Spacers: s56-s94 Gene: unk Type: unknown Location: 388613-388741 bp Gene: cd09641:cas3HD Type: Type-I Location: 390778-393336 bp Gene: cd09693:cas5 Type: Type-I Location: 393360-394100 bp Gene: pfam05107:cas7b Type: Type-I Location: 394102-395091 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 395084-396823 bp Gene: cd09652:cas6 Type: other Location: 396835-397530 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 227262-230126 bp]: array | spacers
           [Locus range 277075-277888 bp]: array | spacers
           [Locus range 387990-390588 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADDS010000009.1 Clostridioides difficile strain 20120077 genome assembly, contig: ERS188661SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 147302 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125789-137487 bp Zoom in on locus 1 x33 CRISPR array Location: 125789-127910 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 125789-127910 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 128094-128360 bp Gene: cd09722:cas1 Type: universal Location: 128363-129343 bp Gene: pfam01930:cas4 Type: Type-I Location: 129346-129864 bp Gene: COG1203:cas3 Type: Type-I Location: 129912-132233 bp Gene: cd09693:cas5 Type: Type-I Location: 132244-132945 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 132947-133861 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 133863-135713 bp Gene: pfam01881:cas6 Type: other Location: 135719-136456 bp Gene: pfam13280:WYL Type: other Location: 136534-137487 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 125789-127910 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADDS010000004.1 Clostridioides difficile strain 20120077 genome assembly, contig: ERS188661SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 258803 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98241-109194 bp 2 Locus 2: 161797-170124 bp Zoom in on locus 1 Zoom in on locus 2 Gene: cd06127:DEDDh Type: Type-I Location: 98241-98747 bp Gene: unk Type: unknown Location: 98906-99574 bp Gene: unk Type: unknown Location: 99987-100493 bp Gene: cd06127:DEDDh Type: Type-I Location: 100857-101894 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 108709-109194 bp Gene: cd09641:cas3HD Type: Type-I Location: 161797-164205 bp Gene: cd09693:cas5 Type: Type-I Location: 164232-165029 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 165045-166058 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 166077-167543 bp Gene: pfam01881:cas6 Type: other Location: 167548-168285 bp Gene: unk Type: unknown Location: 168386-168562 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 169015-170124 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADDS010000002.1 Clostridioides difficile strain 20120077 genome assembly, contig: ERS188661SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 314577 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 209814-210441 bp Zoom in on locus 1 x10 CRISPR array Location: 209814-210441 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 209814-210441 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 209814-210441 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)