CRISPRone

CRISPRone report for GCA_900692015.1_9221_1_49

♦ Seq 1: CAADDT010000002.1 Clostridioides difficile strain FLI018 genome assembly, contig: ERS188620SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 543534 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 144256-144551 bp 2 Locus 2: 348085-348507 bp 3 Locus 3: 464856-465615 bp Zoom in on locus 1 x5 Zoom in on locus 2 x7 Zoom in on locus 3 x12 CRISPR array Location: 144256-144551 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 144256-144551 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 348085-348507 bp Num of repeats: 7 Spacers: s5-s10 CRISPR array Location: 348085-348507 bp Num of repeats: 7 Spacers: s5-s10 CRISPR array Location: 464856-465615 bp Num of repeats: 12 Spacers: s11-s21 CRISPR array Location: 464856-465615 bp Num of repeats: 12 Spacers: s11-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 144256-144551 bp]: array | spacers
           [Locus range 348085-348507 bp]: array | spacers
           [Locus range 464856-465615 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADDT010000007.1 Clostridioides difficile strain FLI018 genome assembly, contig: ERS188620SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 182030 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 40344-42083 bp Zoom in on locus 1 x27 CRISPR array Location: 40344-42083 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 40344-42083 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 40344-42083 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADDT010000005.1 Clostridioides difficile strain FLI018 genome assembly, contig: ERS188620SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 230402 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 140469-140694 bp Zoom in on locus 1 x4 CRISPR array Location: 140469-140694 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 140469-140694 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 140469-140694 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADDT010000020.1 Clostridioides difficile strain FLI018 genome assembly, contig: ERS188620SCcontig000020, whole genome shotgun sequence

⇒Summary: seq-len = 16544 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7989-9963 bp Zoom in on locus 1 x13 x9 CRISPR array Location: 7989-8806 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 7989-8806 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 9409-9963 bp Num of repeats: 9 Spacers: s13-s20 CRISPR array Location: 9409-9963 bp Num of repeats: 9 Spacers: s13-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7989-8806 bp]: array | spacers
           [Locus range 9409-9963 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADDT010000001.1 Clostridioides difficile strain FLI018 genome assembly, contig: ERS188620SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1248643 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 205282-205839 bp 2 Locus 2: 280059-287924 bp 3 Locus 3: 453681-453908 bp 4 Locus 4: 749584-749678 bp Zoom in on locus 1 x9 Zoom in on locus 2 Zoom in on locus 3 x4 Zoom in on locus 4 x2 CRISPR array Location: 205282-205839 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 205282-205839 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 280059-281168 bp Gene: pfam01881:cas6 Type: other Location: 281426-282163 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 282168-283643 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 283663-284676 bp Gene: cd09693:cas5 Type: Type-I Location: 284692-285489 bp Gene: cd09641:cas3HD Type: Type-I Location: 285516-287924 bp CRISPR array Location: 453681-453908 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 453681-453908 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 749584-749678 bp Num of repeats: 2 Spacers: s12-s12 CRISPR array Location: 749584-749678 bp Num of repeats: 2 Spacers: s12-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 205282-205839 bp]: array | spacers
           [Locus range 453681-453908 bp]: array | spacers
           [Locus range 749584-749678 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)