CRISPRone

CRISPRone report for GCA_900692035.1_9221_1_93

♦ Seq 1: CAADDU010000001.1 Clostridioides difficile strain 20120540 genome assembly, contig: ERS188664SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 341625 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 227269-239579 bp 2 Locus 2: 294992-295805 bp Zoom in on locus 1 x44 Zoom in on locus 2 x13 CRISPR array Location: 227269-230133 bp Num of repeats: 44 Spacers: s1-s43 CRISPR array Location: 227269-230133 bp Num of repeats: 44 Spacers: s1-s43 Gene: cd09718:cas1 Type: universal Location: 237535-239190 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 239202-239579 bp CRISPR array Location: 294992-295805 bp Num of repeats: 13 Spacers: s44-s55 CRISPR array Location: 294992-295805 bp Num of repeats: 13 Spacers: s44-s55 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 227269-230133 bp]: array | spacers
           [Locus range 294992-295805 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADDU010000012.1 Clostridioides difficile strain 20120540 genome assembly, contig: ERS188664SCcontig000012, whole genome shotgun sequence

⇒Summary: seq-len = 140734 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61739-73326 bp Zoom in on locus 1 x39 Gene: cd09725:cas2 Type: universal Location: 61739-62029 bp Gene: cd09722:cas1 Type: universal Location: 62240-63247 bp Gene: pfam01930:cas4 Type: Type-I Location: 63273-63767 bp CRISPR array Location: 63852-66384 bp Num of repeats: 39 Spacers: s1-s38 CRISPR array Location: 63852-66384 bp Num of repeats: 39 Spacers: s1-s38 Gene: unk Type: unknown Location: 64475-64603 bp Gene: cd09641:cas3HD Type: Type-I Location: 66574-69132 bp Gene: cd09693:cas5 Type: Type-I Location: 69156-69896 bp Gene: pfam05107:cas7b Type: Type-I Location: 69898-70887 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 70880-72619 bp Gene: cd09652:cas6 Type: other Location: 72631-73326 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 63852-66384 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADDU010000021.1 Clostridioides difficile strain 20120540 genome assembly, contig: ERS188664SCcontig000021, whole genome shotgun sequence

⇒Summary: seq-len = 76026 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 73295-74443 bp Zoom in on locus 1 x18 CRISPR array Location: 73295-74443 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 73295-74443 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 73295-74443 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADDU010000003.1 Clostridioides difficile strain 20120540 genome assembly, contig: ERS188664SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 258509 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88687-97014 bp 2 Locus 2: 149617-160570 bp Zoom in on locus 1 Zoom in on locus 2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 88687-89796 bp Gene: unk Type: unknown Location: 90249-90425 bp Gene: pfam01881:cas6 Type: other Location: 90526-91263 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 91268-92734 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 92753-93766 bp Gene: cd09693:cas5 Type: Type-I Location: 93782-94579 bp Gene: cd09641:cas3HD Type: Type-I Location: 94606-97014 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 149617-150102 bp Gene: cd06127:DEDDh Type: Type-I Location: 156917-157954 bp Gene: unk Type: unknown Location: 158318-158824 bp Gene: unk Type: unknown Location: 159237-159905 bp Gene: cd06127:DEDDh Type: Type-I Location: 160064-160570 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADDU010000002.1 Clostridioides difficile strain 20120540 genome assembly, contig: ERS188664SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 295306 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190598-191225 bp Zoom in on locus 1 x10 CRISPR array Location: 190598-191225 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 190598-191225 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190598-191225 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADDU010000010.1 Clostridioides difficile strain 20120540 genome assembly, contig: ERS188664SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 147282 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125769-137467 bp Zoom in on locus 1 x33 CRISPR array Location: 125769-127890 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 125769-127890 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 128074-128340 bp Gene: cd09722:cas1 Type: universal Location: 128343-129323 bp Gene: pfam01930:cas4 Type: Type-I Location: 129326-129844 bp Gene: COG1203:cas3 Type: Type-I Location: 129892-132213 bp Gene: cd09693:cas5 Type: Type-I Location: 132224-132925 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 132927-133841 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 133843-135693 bp Gene: pfam01881:cas6 Type: other Location: 135699-136436 bp Gene: pfam13280:WYL Type: other Location: 136514-137467 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 125769-127890 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)