CRISPRone

CRISPRone report for GCA_900692075.1_9221_6_17

♦ Seq 1: CAADDY010000001.1 Clostridioides difficile strain 910528/2012 genome assembly, contig: ERS199748SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 392957 bp; # of CRISPR array = 3; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 67658-79246 bp 2 Locus 2: 187235-188049 bp 3 Locus 3: 225551-237862 bp Zoom in on locus 1 x39 Zoom in on locus 2 x13 Zoom in on locus 3 x44 Gene: cd09652:cas6 Type: other Location: 67658-68353 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 68365-70104 bp Gene: pfam05107:cas7b Type: Type-I Location: 70097-71086 bp Gene: cd09693:cas5 Type: Type-I Location: 71088-71828 bp Gene: cd09641:cas3HD Type: Type-I Location: 71852-74410 bp CRISPR array Location: 74600-77134 bp Num of repeats: 39 Spacers: s1-s38 CRISPR array Location: 74600-77134 bp Num of repeats: 39 Spacers: s1-s38 Gene: unk Type: unknown Location: 76447-76575 bp Gene: pfam01930:cas4 Type: Type-I Location: 77218-77712 bp Gene: cd09722:cas1 Type: universal Location: 77747-78745 bp Gene: cd09725:cas2 Type: universal Location: 78956-79246 bp CRISPR array Location: 187235-188049 bp Num of repeats: 13 Spacers: s39-s50 CRISPR array Location: 187235-188049 bp Num of repeats: 13 Spacers: s39-s50 Gene: COG0640:csa3 Type: Subtype-I-A Location: 225551-225928 bp Gene: cd09718:cas1 Type: universal Location: 225940-227595 bp CRISPR array Location: 234997-237862 bp Num of repeats: 44 Spacers: s51-s93 CRISPR array Location: 234997-237862 bp Num of repeats: 44 Spacers: s51-s93 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 74600-77134 bp]: array | spacers
           [Locus range 187235-188049 bp]: array | spacers
           [Locus range 234997-237862 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADDY010000003.1 Clostridioides difficile strain 910528/2012 genome assembly, contig: ERS199748SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 295295 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104083-104709 bp Zoom in on locus 1 x10 CRISPR array Location: 104083-104709 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 104083-104709 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 104083-104709 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADDY010000021.1 Clostridioides difficile strain 910528/2012 genome assembly, contig: ERS199748SCcontig000021, whole genome shotgun sequence

⇒Summary: seq-len = 65674 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63057-64073 bp Zoom in on locus 1 x16 CRISPR array Location: 63057-64073 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 63057-64073 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63057-64073 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADDY010000002.1 Clostridioides difficile strain 910528/2012 genome assembly, contig: ERS199748SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 379069 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 218500-229453 bp 2 Locus 2: 282056-290383 bp Zoom in on locus 1 Zoom in on locus 2 Gene: cd06127:DEDDh Type: Type-I Location: 218500-219006 bp Gene: unk Type: unknown Location: 219165-219833 bp Gene: unk Type: unknown Location: 220246-220752 bp Gene: cd06127:DEDDh Type: Type-I Location: 221116-222153 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 228968-229453 bp Gene: cd09641:cas3HD Type: Type-I Location: 282056-284464 bp Gene: cd09693:cas5 Type: Type-I Location: 284491-285288 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 285304-286317 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 286336-287802 bp Gene: pfam01881:cas6 Type: other Location: 287807-288544 bp Gene: unk Type: unknown Location: 288645-288821 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 289274-290383 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADDY010000009.1 Clostridioides difficile strain 910528/2012 genome assembly, contig: ERS199748SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 147302 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9816-21515 bp Zoom in on locus 1 x33 Gene: pfam13280:WYL Type: other Location: 9816-10769 bp Gene: pfam01881:cas6 Type: other Location: 10847-11584 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 11590-13440 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13442-14356 bp Gene: cd09693:cas5 Type: Type-I Location: 14358-15059 bp Gene: COG1203:cas3 Type: Type-I Location: 15070-17391 bp Gene: pfam01930:cas4 Type: Type-I Location: 17406-17957 bp Gene: cd09722:cas1 Type: universal Location: 17960-18940 bp Gene: cd09725:cas2 Type: universal Location: 18943-19209 bp CRISPR array Location: 19393-21515 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 19393-21515 bp Num of repeats: 33 Spacers: s1-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19393-21515 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)