CRISPRone

CRISPRone report for GCA_900692125.1_9221_6_13

♦ Seq 1: CAADDZ010000002.1 Clostridioides difficile strain 910500/2012 genome assembly, contig: ERS199744SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 295295 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190587-191214 bp Zoom in on locus 1 x10 CRISPR array Location: 190587-191214 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 190587-191214 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190587-191214 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADDZ010000024.1 Clostridioides difficile strain 910500/2012 genome assembly, contig: ERS199744SCcontig000024, whole genome shotgun sequence

⇒Summary: seq-len = 54876 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33363-45061 bp Zoom in on locus 1 x33 CRISPR array Location: 33363-35484 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 33363-35484 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 35668-35934 bp Gene: cd09722:cas1 Type: universal Location: 35937-36917 bp Gene: pfam01930:cas4 Type: Type-I Location: 36920-37438 bp Gene: COG1203:cas3 Type: Type-I Location: 37486-39807 bp Gene: cd09693:cas5 Type: Type-I Location: 39818-40519 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 40521-41435 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 41437-43287 bp Gene: pfam01881:cas6 Type: other Location: 43293-44030 bp Gene: pfam13280:WYL Type: other Location: 44108-45061 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 33363-35484 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADDZ010000001.1 Clostridioides difficile strain 910500/2012 genome assembly, contig: ERS199744SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 579868 bp; # of CRISPR array = 3; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 341943-354253 bp 2 Locus 2: 391756-392569 bp 3 Locus 3: 500558-512211 bp Zoom in on locus 1 x44 Zoom in on locus 2 x13 Zoom in on locus 3 x40 CRISPR array Location: 341943-344807 bp Num of repeats: 44 Spacers: s1-s43 CRISPR array Location: 341943-344807 bp Num of repeats: 44 Spacers: s1-s43 Gene: cd09718:cas1 Type: universal Location: 352209-353864 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 353876-354253 bp CRISPR array Location: 391756-392569 bp Num of repeats: 13 Spacers: s44-s55 CRISPR array Location: 391756-392569 bp Num of repeats: 13 Spacers: s44-s55 Gene: cd09725:cas2 Type: universal Location: 500558-500848 bp Gene: cd09722:cas1 Type: universal Location: 501059-502057 bp Gene: pfam01930:cas4 Type: Type-I Location: 502092-502586 bp CRISPR array Location: 502671-505269 bp Num of repeats: 40 Spacers: s56-s94 CRISPR array Location: 502671-505269 bp Num of repeats: 40 Spacers: s56-s94 Gene: unk Type: unknown Location: 503294-503422 bp Gene: cd09641:cas3HD Type: Type-I Location: 505459-508017 bp Gene: cd09693:cas5 Type: Type-I Location: 508041-508781 bp Gene: pfam05107:cas7b Type: Type-I Location: 508783-509772 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 509765-511504 bp Gene: cd09652:cas6 Type: other Location: 511516-512211 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 341943-344807 bp]: array | spacers
           [Locus range 391756-392569 bp]: array | spacers
           [Locus range 502671-505269 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADDZ010000018.1 Clostridioides difficile strain 910500/2012 genome assembly, contig: ERS199744SCcontig000018, whole genome shotgun sequence

⇒Summary: seq-len = 76062 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1602-2751 bp Zoom in on locus 1 x18 CRISPR array Location: 1602-2751 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 1602-2751 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1602-2751 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADDZ010000004.1 Clostridioides difficile strain 910500/2012 genome assembly, contig: ERS199744SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 258807 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98245-109198 bp 2 Locus 2: 161801-170128 bp Zoom in on locus 1 Zoom in on locus 2 Gene: cd06127:DEDDh Type: Type-I Location: 98245-98751 bp Gene: unk Type: unknown Location: 98910-99578 bp Gene: unk Type: unknown Location: 99991-100497 bp Gene: cd06127:DEDDh Type: Type-I Location: 100861-101898 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 108713-109198 bp Gene: cd09641:cas3HD Type: Type-I Location: 161801-164209 bp Gene: cd09693:cas5 Type: Type-I Location: 164236-165033 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 165049-166062 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 166081-167547 bp Gene: pfam01881:cas6 Type: other Location: 167552-168289 bp Gene: unk Type: unknown Location: 168390-168566 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 169019-170128 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)