CRISPRone

CRISPRone report for GCA_900692135.1_9221_6_23

♦ Seq 1: CAADEA010000005.1 Clostridioides difficile strain SLO005 genome assembly, contig: ERS199754SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 168971 bp; # of CRISPR array = 0; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 687-7175 bp 2 Locus 2: 59778-70731 bp Zoom in on locus 1 Zoom in on locus 2 Gene: pfam01881:cas6 Type: other Location: 687-1424 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1429-2895 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2914-3927 bp Gene: cd09693:cas5 Type: Type-I Location: 3943-4740 bp Gene: cd09641:cas3HD Type: Type-I Location: 4767-7175 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 59778-60263 bp Gene: cd06127:DEDDh Type: Type-I Location: 67078-68115 bp Gene: unk Type: unknown Location: 68479-68985 bp Gene: unk Type: unknown Location: 69398-70066 bp Gene: cd06127:DEDDh Type: Type-I Location: 70225-70731 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADEA010000009.1 Clostridioides difficile strain SLO005 genome assembly, contig: ERS199754SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 147302 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125789-137487 bp Zoom in on locus 1 x33 CRISPR array Location: 125789-127910 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 125789-127910 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 128094-128360 bp Gene: cd09722:cas1 Type: universal Location: 128363-129343 bp Gene: pfam01930:cas4 Type: Type-I Location: 129346-129864 bp Gene: COG1203:cas3 Type: Type-I Location: 129912-132233 bp Gene: cd09693:cas5 Type: Type-I Location: 132244-132945 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 132947-133861 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 133863-135713 bp Gene: pfam01881:cas6 Type: other Location: 135719-136456 bp Gene: pfam13280:WYL Type: other Location: 136534-137487 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 125789-127910 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADEA010000001.1 Clostridioides difficile strain SLO005 genome assembly, contig: ERS199754SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 569240 bp; # of CRISPR array = 3; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 67402-79055 bp 2 Locus 2: 187044-187858 bp 3 Locus 3: 225360-237671 bp Zoom in on locus 1 x40 Zoom in on locus 2 x13 Zoom in on locus 3 x44 Gene: cd09652:cas6 Type: other Location: 67402-68097 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 68109-69848 bp Gene: pfam05107:cas7b Type: Type-I Location: 69841-70830 bp Gene: cd09693:cas5 Type: Type-I Location: 70832-71572 bp Gene: cd09641:cas3HD Type: Type-I Location: 71596-74154 bp CRISPR array Location: 74344-76943 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 74344-76943 bp Num of repeats: 40 Spacers: s1-s39 Gene: unk Type: unknown Location: 76191-76319 bp Gene: pfam01930:cas4 Type: Type-I Location: 77027-77521 bp Gene: cd09722:cas1 Type: universal Location: 77556-78554 bp Gene: cd09725:cas2 Type: universal Location: 78765-79055 bp CRISPR array Location: 187044-187858 bp Num of repeats: 13 Spacers: s40-s51 CRISPR array Location: 187044-187858 bp Num of repeats: 13 Spacers: s40-s51 Gene: COG0640:csa3 Type: Subtype-I-A Location: 225360-225737 bp Gene: cd09718:cas1 Type: universal Location: 225749-227404 bp CRISPR array Location: 234806-237671 bp Num of repeats: 44 Spacers: s52-s94 CRISPR array Location: 234806-237671 bp Num of repeats: 44 Spacers: s52-s94 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 74344-76943 bp]: array | spacers
           [Locus range 187044-187858 bp]: array | spacers
           [Locus range 234806-237671 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADEA010000002.1 Clostridioides difficile strain SLO005 genome assembly, contig: ERS199754SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 296570 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 191772-192399 bp Zoom in on locus 1 x10 CRISPR array Location: 191772-192399 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 191772-192399 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 191772-192399 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADEA010000020.1 Clostridioides difficile strain SLO005 genome assembly, contig: ERS199754SCcontig000020, whole genome shotgun sequence

⇒Summary: seq-len = 76044 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1602-2751 bp Zoom in on locus 1 x18 CRISPR array Location: 1602-2751 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 1602-2751 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1602-2751 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)