CRISPRone

CRISPRone report for GCA_900692155.1_9221_6_20

♦ Seq 1: CAADEB010000002.1 Clostridioides difficile strain S8 genome assembly, contig: ERS199751SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 295350 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190587-191214 bp Zoom in on locus 1 x10 CRISPR array Location: 190587-191214 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 190587-191214 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190587-191214 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADEB010000012.1 Clostridioides difficile strain S8 genome assembly, contig: ERS199751SCcontig000012, whole genome shotgun sequence

⇒Summary: seq-len = 140802 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61741-73394 bp Zoom in on locus 1 x40 Gene: cd09725:cas2 Type: universal Location: 61741-62031 bp Gene: cd09722:cas1 Type: universal Location: 62242-63249 bp Gene: pfam01930:cas4 Type: Type-I Location: 63275-63769 bp CRISPR array Location: 63854-66452 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 63854-66452 bp Num of repeats: 40 Spacers: s1-s39 Gene: unk Type: unknown Location: 64477-64605 bp Gene: cd09641:cas3HD Type: Type-I Location: 66642-69200 bp Gene: cd09693:cas5 Type: Type-I Location: 69224-69964 bp Gene: pfam05107:cas7b Type: Type-I Location: 69966-70955 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 70948-72687 bp Gene: cd09652:cas6 Type: other Location: 72699-73394 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 63854-66452 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADEB010000001.1 Clostridioides difficile strain S8 genome assembly, contig: ERS199751SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 428122 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45919-46733 bp 2 Locus 2: 84235-96546 bp Zoom in on locus 1 x13 Zoom in on locus 2 x44 CRISPR array Location: 45919-46733 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 45919-46733 bp Num of repeats: 13 Spacers: s1-s12 Gene: COG0640:csa3 Type: Subtype-I-A Location: 84235-84612 bp Gene: cd09718:cas1 Type: universal Location: 84624-86279 bp CRISPR array Location: 93681-96546 bp Num of repeats: 44 Spacers: s13-s55 CRISPR array Location: 93681-96546 bp Num of repeats: 44 Spacers: s13-s55 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 45919-46733 bp]: array | spacers
           [Locus range 93681-96546 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADEB010000003.1 Clostridioides difficile strain S8 genome assembly, contig: ERS199751SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 289228 bp; # of CRISPR array = 0; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 685-7173 bp 2 Locus 2: 59776-70729 bp Zoom in on locus 1 Zoom in on locus 2 Gene: pfam01881:cas6 Type: other Location: 685-1422 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1427-2893 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2912-3925 bp Gene: cd09693:cas5 Type: Type-I Location: 3941-4738 bp Gene: cd09641:cas3HD Type: Type-I Location: 4765-7173 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 59776-60261 bp Gene: cd06127:DEDDh Type: Type-I Location: 67076-68113 bp Gene: unk Type: unknown Location: 68477-68983 bp Gene: unk Type: unknown Location: 69396-70064 bp Gene: cd06127:DEDDh Type: Type-I Location: 70223-70729 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADEB010000005.1 Clostridioides difficile strain S8 genome assembly, contig: ERS199751SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 196587 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9823-21522 bp 2 Locus 2: 85724-85949 bp Zoom in on locus 1 x33 Zoom in on locus 2 x4 Gene: pfam13280:WYL Type: other Location: 9823-10776 bp Gene: pfam01881:cas6 Type: other Location: 10854-11591 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 11597-13447 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13449-14363 bp Gene: cd09693:cas5 Type: Type-I Location: 14365-15066 bp Gene: COG1203:cas3 Type: Type-I Location: 15077-17398 bp Gene: pfam01930:cas4 Type: Type-I Location: 17413-17964 bp Gene: cd09722:cas1 Type: universal Location: 17967-18947 bp Gene: cd09725:cas2 Type: universal Location: 18950-19216 bp CRISPR array Location: 19400-21522 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 19400-21522 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 85724-85949 bp Num of repeats: 4 Spacers: s33-s35 CRISPR array Location: 85724-85949 bp Num of repeats: 4 Spacers: s33-s35 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19400-21522 bp]: array | spacers
           [Locus range 85724-85949 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADEB010000020.1 Clostridioides difficile strain S8 genome assembly, contig: ERS199751SCcontig000020, whole genome shotgun sequence

⇒Summary: seq-len = 76062 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1602-2751 bp Zoom in on locus 1 x18 CRISPR array Location: 1602-2751 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 1602-2751 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1602-2751 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)