CRISPRone

CRISPRone report for GCA_900692175.1_9221_6_21

♦ Seq 1: CAADEC010000002.1 Clostridioides difficile strain SLO003 genome assembly, contig: ERS199752SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 295295 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104083-104709 bp Zoom in on locus 1 x10 CRISPR array Location: 104083-104709 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 104083-104709 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 104083-104709 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADEC010000001.1 Clostridioides difficile strain SLO003 genome assembly, contig: ERS199752SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 672676 bp; # of CRISPR array = 3; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 67409-79062 bp 2 Locus 2: 187051-187865 bp 3 Locus 3: 225367-237678 bp Zoom in on locus 1 x40 Zoom in on locus 2 x13 Zoom in on locus 3 x44 Gene: cd09652:cas6 Type: other Location: 67409-68104 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 68116-69855 bp Gene: pfam05107:cas7b Type: Type-I Location: 69848-70837 bp Gene: cd09693:cas5 Type: Type-I Location: 70839-71579 bp Gene: cd09641:cas3HD Type: Type-I Location: 71603-74161 bp CRISPR array Location: 74351-76950 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 74351-76950 bp Num of repeats: 40 Spacers: s1-s39 Gene: unk Type: unknown Location: 76198-76326 bp Gene: pfam01930:cas4 Type: Type-I Location: 77034-77528 bp Gene: cd09722:cas1 Type: universal Location: 77563-78561 bp Gene: cd09725:cas2 Type: universal Location: 78772-79062 bp CRISPR array Location: 187051-187865 bp Num of repeats: 13 Spacers: s40-s51 CRISPR array Location: 187051-187865 bp Num of repeats: 13 Spacers: s40-s51 Gene: COG0640:csa3 Type: Subtype-I-A Location: 225367-225744 bp Gene: cd09718:cas1 Type: universal Location: 225756-227411 bp CRISPR array Location: 234813-237678 bp Num of repeats: 44 Spacers: s52-s94 CRISPR array Location: 234813-237678 bp Num of repeats: 44 Spacers: s52-s94 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 74351-76950 bp]: array | spacers
           [Locus range 187051-187865 bp]: array | spacers
           [Locus range 234813-237678 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADEC010000004.1 Clostridioides difficile strain SLO003 genome assembly, contig: ERS199752SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 258814 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88687-97014 bp 2 Locus 2: 149617-160570 bp Zoom in on locus 1 Zoom in on locus 2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 88687-89796 bp Gene: unk Type: unknown Location: 90249-90425 bp Gene: pfam01881:cas6 Type: other Location: 90526-91263 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 91268-92734 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 92753-93766 bp Gene: cd09693:cas5 Type: Type-I Location: 93782-94579 bp Gene: cd09641:cas3HD Type: Type-I Location: 94606-97014 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 149617-150102 bp Gene: cd06127:DEDDh Type: Type-I Location: 156917-157954 bp Gene: unk Type: unknown Location: 158318-158824 bp Gene: unk Type: unknown Location: 159237-159905 bp Gene: cd06127:DEDDh Type: Type-I Location: 160064-160570 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADEC010000019.1 Clostridioides difficile strain SLO003 genome assembly, contig: ERS199752SCcontig000019, whole genome shotgun sequence

⇒Summary: seq-len = 65809 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1602-2751 bp Zoom in on locus 1 x18 CRISPR array Location: 1602-2751 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 1602-2751 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1602-2751 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADEC010000009.1 Clostridioides difficile strain SLO003 genome assembly, contig: ERS199752SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 147280 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125769-137467 bp Zoom in on locus 1 x33 CRISPR array Location: 125769-127890 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 125769-127890 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 128074-128340 bp Gene: cd09722:cas1 Type: universal Location: 128343-129323 bp Gene: pfam01930:cas4 Type: Type-I Location: 129326-129844 bp Gene: COG1203:cas3 Type: Type-I Location: 129892-132213 bp Gene: cd09693:cas5 Type: Type-I Location: 132224-132925 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 132927-133841 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 133843-135693 bp Gene: pfam01881:cas6 Type: other Location: 135699-136436 bp Gene: pfam13280:WYL Type: other Location: 136514-137467 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 125769-127890 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)