CRISPRone

CRISPRone report for GCA_900692195.1_9221_6_30

♦ Seq 1: CAADED010000004.1 Clostridioides difficile strain SLO012 genome assembly, contig: ERS199761SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 258507 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97938-108891 bp 2 Locus 2: 161494-169821 bp Zoom in on locus 1 Zoom in on locus 2 Gene: cd06127:DEDDh Type: Type-I Location: 97938-98444 bp Gene: unk Type: unknown Location: 98603-99271 bp Gene: unk Type: unknown Location: 99684-100190 bp Gene: cd06127:DEDDh Type: Type-I Location: 100554-101591 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 108406-108891 bp Gene: cd09641:cas3HD Type: Type-I Location: 161494-163902 bp Gene: cd09693:cas5 Type: Type-I Location: 163929-164726 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 164742-165755 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 165774-167240 bp Gene: pfam01881:cas6 Type: other Location: 167245-167982 bp Gene: unk Type: unknown Location: 168083-168259 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 168712-169821 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADED010000002.1 Clostridioides difficile strain SLO012 genome assembly, contig: ERS199761SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 321487 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 67409-79062 bp Zoom in on locus 1 x40 Gene: cd09652:cas6 Type: other Location: 67409-68104 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 68116-69855 bp Gene: pfam05107:cas7b Type: Type-I Location: 69848-70837 bp Gene: cd09693:cas5 Type: Type-I Location: 70839-71579 bp Gene: cd09641:cas3HD Type: Type-I Location: 71603-74161 bp CRISPR array Location: 74351-76950 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 74351-76950 bp Num of repeats: 40 Spacers: s1-s39 Gene: pfam01930:cas4 Type: Type-I Location: 77034-77528 bp Gene: cd09722:cas1 Type: universal Location: 77554-78561 bp Gene: cd09725:cas2 Type: universal Location: 78772-79062 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 74351-76950 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADED010000018.1 Clostridioides difficile strain SLO012 genome assembly, contig: ERS199761SCcontig000018, whole genome shotgun sequence

⇒Summary: seq-len = 83783 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1631-2780 bp Zoom in on locus 1 x18 CRISPR array Location: 1631-2780 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 1631-2780 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1631-2780 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADED010000025.1 Clostridioides difficile strain SLO012 genome assembly, contig: ERS199761SCcontig000025, whole genome shotgun sequence

⇒Summary: seq-len = 58641 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9816-21515 bp Zoom in on locus 1 x33 Gene: pfam13280:WYL Type: other Location: 9816-10769 bp Gene: pfam01881:cas6 Type: other Location: 10847-11584 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 11590-13440 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13442-14356 bp Gene: cd09693:cas5 Type: Type-I Location: 14358-15059 bp Gene: COG1203:cas3 Type: Type-I Location: 15070-17391 bp Gene: pfam01930:cas4 Type: Type-I Location: 17406-17957 bp Gene: cd09722:cas1 Type: universal Location: 17960-18940 bp Gene: cd09725:cas2 Type: universal Location: 18943-19209 bp CRISPR array Location: 19393-21515 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 19393-21515 bp Num of repeats: 33 Spacers: s1-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19393-21515 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADED010000001.1 Clostridioides difficile strain SLO012 genome assembly, contig: ERS199761SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 563167 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 466641-478951 bp 2 Locus 2: 516454-517267 bp Zoom in on locus 1 x44 Zoom in on locus 2 x13 CRISPR array Location: 466641-469505 bp Num of repeats: 44 Spacers: s1-s43 CRISPR array Location: 466641-469505 bp Num of repeats: 44 Spacers: s1-s43 Gene: cd09718:cas1 Type: universal Location: 476907-478562 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 478574-478951 bp CRISPR array Location: 516454-517267 bp Num of repeats: 13 Spacers: s44-s55 CRISPR array Location: 516454-517267 bp Num of repeats: 13 Spacers: s44-s55 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 466641-469505 bp]: array | spacers
           [Locus range 516454-517267 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)