CRISPRone

CRISPRone report for GCA_900692205.1_9221_6_27

♦ Seq 1: CAADEE010000003.1 Clostridioides difficile strain SLO009 genome assembly, contig: ERS199758SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 289232 bp; # of CRISPR array = 0; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 218500-229453 bp 2 Locus 2: 282056-288544 bp Zoom in on locus 1 Zoom in on locus 2 Gene: cd06127:DEDDh Type: Type-I Location: 218500-219006 bp Gene: unk Type: unknown Location: 219165-219833 bp Gene: unk Type: unknown Location: 220246-220752 bp Gene: cd06127:DEDDh Type: Type-I Location: 221116-222153 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 228968-229453 bp Gene: cd09641:cas3HD Type: Type-I Location: 282056-284464 bp Gene: cd09693:cas5 Type: Type-I Location: 284491-285288 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 285304-286317 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 286336-287802 bp Gene: pfam01881:cas6 Type: other Location: 287807-288544 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADEE010000001.1 Clostridioides difficile strain SLO009 genome assembly, contig: ERS199758SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 569254 bp; # of CRISPR array = 3; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 331578-343888 bp 2 Locus 2: 381391-382204 bp 3 Locus 3: 490193-501846 bp Zoom in on locus 1 x44 Zoom in on locus 2 x13 Zoom in on locus 3 x40 CRISPR array Location: 331578-334442 bp Num of repeats: 44 Spacers: s1-s43 CRISPR array Location: 331578-334442 bp Num of repeats: 44 Spacers: s1-s43 Gene: cd09718:cas1 Type: universal Location: 341844-343499 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 343511-343888 bp CRISPR array Location: 381391-382204 bp Num of repeats: 13 Spacers: s44-s55 CRISPR array Location: 381391-382204 bp Num of repeats: 13 Spacers: s44-s55 Gene: cd09725:cas2 Type: universal Location: 490193-490483 bp Gene: cd09722:cas1 Type: universal Location: 490694-491692 bp Gene: pfam01930:cas4 Type: Type-I Location: 491727-492221 bp CRISPR array Location: 492306-494904 bp Num of repeats: 40 Spacers: s56-s94 CRISPR array Location: 492306-494904 bp Num of repeats: 40 Spacers: s56-s94 Gene: unk Type: unknown Location: 492929-493057 bp Gene: cd09641:cas3HD Type: Type-I Location: 495094-497652 bp Gene: cd09693:cas5 Type: Type-I Location: 497676-498416 bp Gene: pfam05107:cas7b Type: Type-I Location: 498418-499407 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 499400-501139 bp Gene: cd09652:cas6 Type: other Location: 501151-501846 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 331578-334442 bp]: array | spacers
           [Locus range 381391-382204 bp]: array | spacers
           [Locus range 492306-494904 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADEE010000010.1 Clostridioides difficile strain SLO009 genome assembly, contig: ERS199758SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 147307 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9816-21515 bp Zoom in on locus 1 x33 Gene: pfam13280:WYL Type: other Location: 9816-10769 bp Gene: pfam01881:cas6 Type: other Location: 10847-11584 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 11590-13440 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13442-14356 bp Gene: cd09693:cas5 Type: Type-I Location: 14358-15059 bp Gene: COG1203:cas3 Type: Type-I Location: 15070-17391 bp Gene: pfam01930:cas4 Type: Type-I Location: 17406-17957 bp Gene: cd09722:cas1 Type: universal Location: 17960-18940 bp Gene: cd09725:cas2 Type: universal Location: 18943-19209 bp CRISPR array Location: 19393-21515 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 19393-21515 bp Num of repeats: 33 Spacers: s1-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19393-21515 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADEE010000002.1 Clostridioides difficile strain SLO009 genome assembly, contig: ERS199758SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 295295 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190587-191214 bp Zoom in on locus 1 x10 CRISPR array Location: 190587-191214 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 190587-191214 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190587-191214 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADEE010000018.1 Clostridioides difficile strain SLO009 genome assembly, contig: ERS199758SCcontig000018, whole genome shotgun sequence

⇒Summary: seq-len = 76044 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 73295-74443 bp Zoom in on locus 1 x18 CRISPR array Location: 73295-74443 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 73295-74443 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 73295-74443 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)