CRISPRone

CRISPRone report for GCA_900692215.1_9221_6_29

♦ Seq 1: CAADEF010000008.1 Clostridioides difficile strain SLO011 genome assembly, contig: ERS199760SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 161579 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 140059-151757 bp Zoom in on locus 1 x33 CRISPR array Location: 140059-142180 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 140059-142180 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 142364-142630 bp Gene: cd09722:cas1 Type: universal Location: 142633-143613 bp Gene: pfam01930:cas4 Type: Type-I Location: 143616-144134 bp Gene: COG1203:cas3 Type: Type-I Location: 144182-146503 bp Gene: cd09693:cas5 Type: Type-I Location: 146514-147215 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 147217-148131 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 148133-149983 bp Gene: pfam01881:cas6 Type: other Location: 149989-150726 bp Gene: pfam13280:WYL Type: other Location: 150804-151757 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 140059-142180 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADEF010000004.1 Clostridioides difficile strain SLO011 genome assembly, contig: ERS199760SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 258507 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88687-97014 bp 2 Locus 2: 149617-160570 bp Zoom in on locus 1 Zoom in on locus 2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 88687-89796 bp Gene: unk Type: unknown Location: 90249-90425 bp Gene: pfam01881:cas6 Type: other Location: 90526-91263 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 91268-92734 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 92753-93766 bp Gene: cd09693:cas5 Type: Type-I Location: 93782-94579 bp Gene: cd09641:cas3HD Type: Type-I Location: 94606-97014 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 149617-150102 bp Gene: cd06127:DEDDh Type: Type-I Location: 156917-157954 bp Gene: unk Type: unknown Location: 158318-158824 bp Gene: unk Type: unknown Location: 159237-159905 bp Gene: cd06127:DEDDh Type: Type-I Location: 160064-160570 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADEF010000001.1 Clostridioides difficile strain SLO011 genome assembly, contig: ERS199760SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 429001 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 332465-344775 bp 2 Locus 2: 382278-383091 bp Zoom in on locus 1 x44 Zoom in on locus 2 x13 CRISPR array Location: 332465-335329 bp Num of repeats: 44 Spacers: s1-s43 CRISPR array Location: 332465-335329 bp Num of repeats: 44 Spacers: s1-s43 Gene: cd09718:cas1 Type: universal Location: 342731-344386 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 344398-344775 bp CRISPR array Location: 382278-383091 bp Num of repeats: 13 Spacers: s44-s55 CRISPR array Location: 382278-383091 bp Num of repeats: 13 Spacers: s44-s55 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 332465-335329 bp]: array | spacers
           [Locus range 382278-383091 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADEF010000018.1 Clostridioides difficile strain SLO011 genome assembly, contig: ERS199760SCcontig000018, whole genome shotgun sequence

⇒Summary: seq-len = 83754 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1602-2751 bp Zoom in on locus 1 x18 CRISPR array Location: 1602-2751 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 1602-2751 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1602-2751 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADEF010000002.1 Clostridioides difficile strain SLO011 genome assembly, contig: ERS199760SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 321487 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 242426-254079 bp Zoom in on locus 1 x40 Gene: cd09725:cas2 Type: universal Location: 242426-242716 bp Gene: cd09722:cas1 Type: universal Location: 242927-243934 bp Gene: pfam01930:cas4 Type: Type-I Location: 243960-244454 bp CRISPR array Location: 244539-247137 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 244539-247137 bp Num of repeats: 40 Spacers: s1-s39 Gene: unk Type: unknown Location: 245162-245290 bp Gene: cd09641:cas3HD Type: Type-I Location: 247327-249885 bp Gene: cd09693:cas5 Type: Type-I Location: 249909-250649 bp Gene: pfam05107:cas7b Type: Type-I Location: 250651-251640 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 251633-253372 bp Gene: cd09652:cas6 Type: other Location: 253384-254079 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244539-247137 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)