CRISPRone

CRISPRone report for GCA_900692235.1_9221_6_26

♦ Seq 1: CAADEH010000004.1 Clostridioides difficile strain SLO008 genome assembly, contig: ERS199757SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 258814 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88687-97014 bp 2 Locus 2: 149617-160570 bp Zoom in on locus 1 Zoom in on locus 2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 88687-89796 bp Gene: unk Type: unknown Location: 90249-90425 bp Gene: pfam01881:cas6 Type: other Location: 90526-91263 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 91268-92734 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 92753-93766 bp Gene: cd09693:cas5 Type: Type-I Location: 93782-94579 bp Gene: cd09641:cas3HD Type: Type-I Location: 94606-97014 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 149617-150102 bp Gene: cd06127:DEDDh Type: Type-I Location: 156917-157954 bp Gene: unk Type: unknown Location: 158318-158824 bp Gene: unk Type: unknown Location: 159237-159905 bp Gene: cd06127:DEDDh Type: Type-I Location: 160064-160570 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADEH010000001.1 Clostridioides difficile strain SLO008 genome assembly, contig: ERS199757SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 517641 bp; # of CRISPR array = 3; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 67658-79311 bp 2 Locus 2: 187300-188114 bp 3 Locus 3: 225616-237927 bp Zoom in on locus 1 x40 Zoom in on locus 2 x13 Zoom in on locus 3 x44 Gene: cd09652:cas6 Type: other Location: 67658-68353 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 68365-70104 bp Gene: pfam05107:cas7b Type: Type-I Location: 70097-71086 bp Gene: cd09693:cas5 Type: Type-I Location: 71088-71828 bp Gene: cd09641:cas3HD Type: Type-I Location: 71852-74410 bp CRISPR array Location: 74600-77199 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 74600-77199 bp Num of repeats: 40 Spacers: s1-s39 Gene: unk Type: unknown Location: 76447-76575 bp Gene: pfam01930:cas4 Type: Type-I Location: 77283-77777 bp Gene: cd09722:cas1 Type: universal Location: 77812-78810 bp Gene: cd09725:cas2 Type: universal Location: 79021-79311 bp CRISPR array Location: 187300-188114 bp Num of repeats: 13 Spacers: s40-s51 CRISPR array Location: 187300-188114 bp Num of repeats: 13 Spacers: s40-s51 Gene: COG0640:csa3 Type: Subtype-I-A Location: 225616-225993 bp Gene: cd09718:cas1 Type: universal Location: 226005-227660 bp CRISPR array Location: 235062-237927 bp Num of repeats: 44 Spacers: s52-s94 CRISPR array Location: 235062-237927 bp Num of repeats: 44 Spacers: s52-s94 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 74600-77199 bp]: array | spacers
           [Locus range 187300-188114 bp]: array | spacers
           [Locus range 235062-237927 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADEH010000002.1 Clostridioides difficile strain SLO008 genome assembly, contig: ERS199757SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 293980 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189272-189899 bp Zoom in on locus 1 x10 CRISPR array Location: 189272-189899 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 189272-189899 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189272-189899 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADEH010000015.1 Clostridioides difficile strain SLO008 genome assembly, contig: ERS199757SCcontig000015, whole genome shotgun sequence

⇒Summary: seq-len = 111694 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 108945-110093 bp Zoom in on locus 1 x18 CRISPR array Location: 108945-110093 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 108945-110093 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 108945-110093 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADEH010000010.1 Clostridioides difficile strain SLO008 genome assembly, contig: ERS199757SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 147307 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9816-21515 bp Zoom in on locus 1 x33 Gene: pfam13280:WYL Type: other Location: 9816-10769 bp Gene: pfam01881:cas6 Type: other Location: 10847-11584 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 11590-13440 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13442-14356 bp Gene: cd09693:cas5 Type: Type-I Location: 14358-15059 bp Gene: COG1203:cas3 Type: Type-I Location: 15070-17391 bp Gene: pfam01930:cas4 Type: Type-I Location: 17406-17957 bp Gene: cd09722:cas1 Type: universal Location: 17960-18940 bp Gene: cd09725:cas2 Type: universal Location: 18943-19209 bp CRISPR array Location: 19393-21515 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 19393-21515 bp Num of repeats: 33 Spacers: s1-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19393-21515 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)