CRISPRone

CRISPRone report for GCA_900692255.1_9221_6_28

♦ Seq 1: CAADEG010000002.1 Clostridioides difficile strain S23 genome assembly, contig: ERS199759SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 293978 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189270-189897 bp Zoom in on locus 1 x10 CRISPR array Location: 189270-189897 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 189270-189897 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189270-189897 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADEG010000001.1 Clostridioides difficile strain S23 genome assembly, contig: ERS199759SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 428639 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46081-46895 bp 2 Locus 2: 84397-96708 bp Zoom in on locus 1 x13 Zoom in on locus 2 x44 CRISPR array Location: 46081-46895 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 46081-46895 bp Num of repeats: 13 Spacers: s1-s12 Gene: COG0640:csa3 Type: Subtype-I-A Location: 84397-84774 bp Gene: cd09718:cas1 Type: universal Location: 84786-86441 bp CRISPR array Location: 93843-96708 bp Num of repeats: 44 Spacers: s13-s55 CRISPR array Location: 93843-96708 bp Num of repeats: 44 Spacers: s13-s55 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 46081-46895 bp]: array | spacers
           [Locus range 93843-96708 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADEG010000005.1 Clostridioides difficile strain S23 genome assembly, contig: ERS199759SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 168975 bp; # of CRISPR array = 0; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 689-7177 bp 2 Locus 2: 59780-70733 bp Zoom in on locus 1 Zoom in on locus 2 Gene: pfam01881:cas6 Type: other Location: 689-1426 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1431-2897 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2916-3929 bp Gene: cd09693:cas5 Type: Type-I Location: 3945-4742 bp Gene: cd09641:cas3HD Type: Type-I Location: 4769-7177 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 59780-60265 bp Gene: cd06127:DEDDh Type: Type-I Location: 67080-68117 bp Gene: unk Type: unknown Location: 68481-68987 bp Gene: unk Type: unknown Location: 69400-70068 bp Gene: cd06127:DEDDh Type: Type-I Location: 70227-70733 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADEG010000012.1 Clostridioides difficile strain S23 genome assembly, contig: ERS199759SCcontig000012, whole genome shotgun sequence

⇒Summary: seq-len = 141055 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 67658-79311 bp Zoom in on locus 1 x40 Gene: cd09652:cas6 Type: other Location: 67658-68353 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 68365-70104 bp Gene: pfam05107:cas7b Type: Type-I Location: 70097-71086 bp Gene: cd09693:cas5 Type: Type-I Location: 71088-71828 bp Gene: cd09641:cas3HD Type: Type-I Location: 71852-74410 bp CRISPR array Location: 74600-77199 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 74600-77199 bp Num of repeats: 40 Spacers: s1-s39 Gene: pfam01930:cas4 Type: Type-I Location: 77283-77777 bp Gene: cd09722:cas1 Type: universal Location: 77803-78810 bp Gene: cd09725:cas2 Type: universal Location: 79021-79311 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 74600-77199 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADEG010000003.1 Clostridioides difficile strain S23 genome assembly, contig: ERS199759SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 196696 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9816-21515 bp 2 Locus 2: 82098-82323 bp Zoom in on locus 1 x33 Zoom in on locus 2 x4 Gene: pfam13280:WYL Type: other Location: 9816-10769 bp Gene: pfam01881:cas6 Type: other Location: 10847-11584 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 11590-13440 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13442-14356 bp Gene: cd09693:cas5 Type: Type-I Location: 14358-15059 bp Gene: COG1203:cas3 Type: Type-I Location: 15070-17391 bp Gene: pfam01930:cas4 Type: Type-I Location: 17406-17957 bp Gene: cd09722:cas1 Type: universal Location: 17960-18940 bp Gene: cd09725:cas2 Type: universal Location: 18943-19209 bp CRISPR array Location: 19393-21515 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 19393-21515 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 82098-82323 bp Num of repeats: 4 Spacers: s33-s35 CRISPR array Location: 82098-82323 bp Num of repeats: 4 Spacers: s33-s35 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19393-21515 bp]: array | spacers
           [Locus range 82098-82323 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADEG010000021.1 Clostridioides difficile strain S23 genome assembly, contig: ERS199759SCcontig000021, whole genome shotgun sequence

⇒Summary: seq-len = 76044 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 73295-74443 bp Zoom in on locus 1 x18 CRISPR array Location: 73295-74443 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 73295-74443 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 73295-74443 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)