CRISPRone

CRISPRone report for GCA_900692265.1_9221_6_36

♦ Seq 1: CAADEI010000002.1 Clostridioides difficile strain SWE002 genome assembly, contig: ERS199767SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 466980 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 157018-167071 bp Zoom in on locus 1 x8 Gene: pfam13280:WYL Type: other Location: 157018-157932 bp Gene: pfam01881:cas6 Type: other Location: 157953-158747 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 158753-160630 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 160632-161546 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 161548-162249 bp Gene: COG1203:cas3 Type: Type-I Location: 162260-164581 bp Gene: pfam01930:cas4 Type: Type-I Location: 164596-165147 bp Gene: cd09722:cas1 Type: universal Location: 165150-166130 bp Gene: cd09725:cas2 Type: universal Location: 166133-166399 bp CRISPR array Location: 166583-167071 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 166583-167071 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 166583-167071 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADEI010000004.1 Clostridioides difficile strain SWE002 genome assembly, contig: ERS199767SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 340712 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 237907-238200 bp Zoom in on locus 1 x5 CRISPR array Location: 237907-238200 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 237907-238200 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 237907-238200 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADEI010000001.1 Clostridioides difficile strain SWE002 genome assembly, contig: ERS199767SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 743899 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 313943-321808 bp 2 Locus 2: 483759-484313 bp Zoom in on locus 1 Zoom in on locus 2 x9 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 313943-315052 bp Gene: pfam01881:cas6 Type: other Location: 315310-316047 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 316052-317527 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 317547-318560 bp Gene: cd09693:cas5 Type: Type-I Location: 318576-319373 bp Gene: cd09641:cas3HD Type: Type-I Location: 319400-321808 bp CRISPR array Location: 483759-484313 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 483759-484313 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 483759-484313 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADEI010000014.1 Clostridioides difficile strain SWE002 genome assembly, contig: ERS199767SCcontig000014, whole genome shotgun sequence

⇒Summary: seq-len = 115806 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 43061-43155 bp Zoom in on locus 1 x2 CRISPR array Location: 43061-43155 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 43061-43155 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 43061-43155 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADEI010000008.1 Clostridioides difficile strain SWE002 genome assembly, contig: ERS199767SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 251363 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56617-58360 bp 2 Locus 2: 231903-232790 bp Zoom in on locus 1 x27 Zoom in on locus 2 x14 CRISPR array Location: 56617-58360 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 56617-58360 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 231903-232790 bp Num of repeats: 14 Spacers: s27-s39 CRISPR array Location: 231903-232790 bp Num of repeats: 14 Spacers: s27-s39 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 56617-58360 bp]: array | spacers
           [Locus range 231903-232790 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADEI010000009.1 Clostridioides difficile strain SWE002 genome assembly, contig: ERS199767SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 214285 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90946-91173 bp Zoom in on locus 1 x4 CRISPR array Location: 90946-91173 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 90946-91173 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90946-91173 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)