CRISPRone

CRISPRone report for GCA_900692275.1_9221_6_35

♦ Seq 1: CAADEJ010000039.1 Clostridioides difficile strain SWE001 genome assembly, contig: ERS199766SCcontig000039, whole genome shotgun sequence

⇒Summary: seq-len = 10786 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4691-5315 bp Zoom in on locus 1 x10 CRISPR array Location: 4691-5315 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 4691-5315 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4691-5315 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADEJ010000029.1 Clostridioides difficile strain SWE001 genome assembly, contig: ERS199766SCcontig000029, whole genome shotgun sequence

⇒Summary: seq-len = 25653 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22208-24618 bp Zoom in on locus 1 x4 x5 CRISPR array Location: 22208-22433 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 22208-22433 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 24329-24618 bp Num of repeats: 5 Spacers: s4-s7 CRISPR array Location: 24329-24618 bp Num of repeats: 5 Spacers: s4-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 22208-22433 bp]: array | spacers
           [Locus range 24329-24618 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADEJ010000020.1 Clostridioides difficile strain SWE001 genome assembly, contig: ERS199766SCcontig000020, whole genome shotgun sequence

⇒Summary: seq-len = 75974 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1602-2689 bp Zoom in on locus 1 x17 CRISPR array Location: 1602-2689 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 1602-2689 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1602-2689 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADEJ010000010.1 Clostridioides difficile strain SWE001 genome assembly, contig: ERS199766SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 146580 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125780-136765 bp Zoom in on locus 1 x22 CRISPR array Location: 125780-127188 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 125780-127188 bp Num of repeats: 22 Spacers: s1-s21 Gene: cd09725:cas2 Type: universal Location: 127372-127638 bp Gene: cd09722:cas1 Type: universal Location: 127641-128621 bp Gene: pfam01930:cas4 Type: Type-I Location: 128624-129142 bp Gene: COG1203:cas3 Type: Type-I Location: 129190-131511 bp Gene: cd09693:cas5 Type: Type-I Location: 131522-132223 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 132225-133139 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 133141-134991 bp Gene: pfam01881:cas6 Type: other Location: 134997-135734 bp Gene: pfam13280:WYL Type: other Location: 135812-136765 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 125780-127188 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADEJ010000004.1 Clostridioides difficile strain SWE001 genome assembly, contig: ERS199766SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 255039 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 94514-105467 bp 2 Locus 2: 158069-166396 bp Zoom in on locus 1 Zoom in on locus 2 Gene: cd06127:DEDDh Type: Type-I Location: 94514-95020 bp Gene: unk Type: unknown Location: 95179-95847 bp Gene: unk Type: unknown Location: 96260-96766 bp Gene: cd06127:DEDDh Type: Type-I Location: 97130-98167 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 104982-105467 bp Gene: cd09641:cas3HD Type: Type-I Location: 158069-160477 bp Gene: cd09693:cas5 Type: Type-I Location: 160504-161301 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 161317-162330 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 162349-163815 bp Gene: pfam01881:cas6 Type: other Location: 163820-164557 bp Gene: unk Type: unknown Location: 164658-164834 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 165287-166396 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADEJ010000001.1 Clostridioides difficile strain SWE001 genome assembly, contig: ERS199766SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 438922 bp; # of CRISPR array = 3; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 67659-77927 bp 2 Locus 2: 185831-186578 bp 3 Locus 3: 224080-234544 bp Zoom in on locus 1 x19 Zoom in on locus 2 x12 Zoom in on locus 3 x16 Gene: cd09652:cas6 Type: other Location: 67659-68354 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 68366-70042 bp Gene: pfam05107:cas7b Type: Type-I Location: 70091-71086 bp Gene: cd09693:cas5 Type: Type-I Location: 71088-71828 bp Gene: cd09641:cas3HD Type: Type-I Location: 71852-74410 bp CRISPR array Location: 74600-75815 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 74600-75815 bp Num of repeats: 19 Spacers: s1-s18 Gene: pfam01930:cas4 Type: Type-I Location: 75899-76393 bp Gene: cd09722:cas1 Type: universal Location: 76419-77426 bp Gene: cd09725:cas2 Type: universal Location: 77637-77927 bp CRISPR array Location: 185831-186578 bp Num of repeats: 12 Spacers: s19-s29 CRISPR array Location: 185831-186578 bp Num of repeats: 12 Spacers: s19-s29 Gene: COG0640:csa3 Type: Subtype-I-A Location: 224080-224457 bp Gene: cd09718:cas1 Type: universal Location: 224469-226124 bp CRISPR array Location: 233525-234544 bp Num of repeats: 16 Spacers: s30-s44 CRISPR array Location: 233525-234544 bp Num of repeats: 16 Spacers: s30-s44 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 74600-75815 bp]: array | spacers
           [Locus range 185831-186578 bp]: array | spacers
           [Locus range 233525-234544 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)