CRISPRone

CRISPRone report for GCA_900692285.1_9221_6_33

♦ Seq 1: CAADEK010000025.1 Clostridioides difficile strain SLO015 genome assembly, contig: ERS199764SCcontig000025, whole genome shotgun sequence

⇒Summary: seq-len = 58655 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37135-48833 bp Zoom in on locus 1 x33 CRISPR array Location: 37135-39256 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 37135-39256 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 39440-39706 bp Gene: cd09722:cas1 Type: universal Location: 39709-40689 bp Gene: pfam01930:cas4 Type: Type-I Location: 40692-41210 bp Gene: COG1203:cas3 Type: Type-I Location: 41258-43579 bp Gene: cd09693:cas5 Type: Type-I Location: 43590-44291 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 44293-45207 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 45209-47059 bp Gene: pfam01881:cas6 Type: other Location: 47065-47802 bp Gene: pfam13280:WYL Type: other Location: 47880-48833 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 37135-39256 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADEK010000002.1 Clostridioides difficile strain SLO015 genome assembly, contig: ERS199764SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 321487 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 242426-254079 bp Zoom in on locus 1 x40 Gene: cd09725:cas2 Type: universal Location: 242426-242716 bp Gene: cd09722:cas1 Type: universal Location: 242927-243934 bp Gene: pfam01930:cas4 Type: Type-I Location: 243960-244454 bp CRISPR array Location: 244539-247137 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 244539-247137 bp Num of repeats: 40 Spacers: s1-s39 Gene: unk Type: unknown Location: 245162-245290 bp Gene: cd09641:cas3HD Type: Type-I Location: 247327-249885 bp Gene: cd09693:cas5 Type: Type-I Location: 249909-250649 bp Gene: pfam05107:cas7b Type: Type-I Location: 250651-251640 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 251633-253372 bp Gene: cd09652:cas6 Type: other Location: 253384-254079 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244539-247137 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADEK010000005.1 Clostridioides difficile strain SLO015 genome assembly, contig: ERS199764SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 258814 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98245-109198 bp 2 Locus 2: 161801-170128 bp Zoom in on locus 1 Zoom in on locus 2 Gene: cd06127:DEDDh Type: Type-I Location: 98245-98751 bp Gene: unk Type: unknown Location: 98910-99578 bp Gene: unk Type: unknown Location: 99991-100497 bp Gene: cd06127:DEDDh Type: Type-I Location: 100861-101898 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 108713-109198 bp Gene: cd09641:cas3HD Type: Type-I Location: 161801-164209 bp Gene: cd09693:cas5 Type: Type-I Location: 164236-165033 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 165049-166062 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 166081-167547 bp Gene: pfam01881:cas6 Type: other Location: 167552-168289 bp Gene: unk Type: unknown Location: 168390-168566 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 169019-170128 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADEK010000001.1 Clostridioides difficile strain SLO015 genome assembly, contig: ERS199764SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 436144 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53054-53868 bp 2 Locus 2: 91370-103681 bp Zoom in on locus 1 x13 Zoom in on locus 2 x44 CRISPR array Location: 53054-53868 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 53054-53868 bp Num of repeats: 13 Spacers: s1-s12 Gene: COG0640:csa3 Type: Subtype-I-A Location: 91370-91747 bp Gene: cd09718:cas1 Type: universal Location: 91759-93414 bp CRISPR array Location: 100816-103681 bp Num of repeats: 44 Spacers: s13-s55 CRISPR array Location: 100816-103681 bp Num of repeats: 44 Spacers: s13-s55 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 53054-53868 bp]: array | spacers
           [Locus range 100816-103681 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADEK010000021.1 Clostridioides difficile strain SLO015 genome assembly, contig: ERS199764SCcontig000021, whole genome shotgun sequence

⇒Summary: seq-len = 65806 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63057-64205 bp Zoom in on locus 1 x18 CRISPR array Location: 63057-64205 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 63057-64205 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63057-64205 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)