CRISPRone

CRISPRone report for GCA_900692295.1_9221_6_38

♦ Seq 1: CAADEP010000013.1 Clostridioides difficile strain SWE004 genome assembly, contig: ERS199769SCcontig000013, whole genome shotgun sequence

⇒Summary: seq-len = 115541 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 72653-72746 bp Zoom in on locus 1 x2 CRISPR array Location: 72653-72746 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 72653-72746 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 72653-72746 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADEP010000007.1 Clostridioides difficile strain SWE004 genome assembly, contig: ERS199769SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 253460 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19261-20149 bp 2 Locus 2: 195101-196845 bp Zoom in on locus 1 x14 Zoom in on locus 2 x27 CRISPR array Location: 19261-20149 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 19261-20149 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 195101-196845 bp Num of repeats: 27 Spacers: s14-s39 CRISPR array Location: 195101-196845 bp Num of repeats: 27 Spacers: s14-s39 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19261-20149 bp]: array | spacers
           [Locus range 195101-196845 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADEP010000003.1 Clostridioides difficile strain SWE004 genome assembly, contig: ERS199769SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 457444 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 299867-309919 bp Zoom in on locus 1 x8 CRISPR array Location: 299867-300354 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 299867-300354 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09725:cas2 Type: universal Location: 300538-300804 bp Gene: cd09722:cas1 Type: universal Location: 300807-301787 bp Gene: pfam01930:cas4 Type: Type-I Location: 301790-302308 bp Gene: COG1203:cas3 Type: Type-I Location: 302356-304677 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 304688-305389 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 305391-306305 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 306307-308184 bp Gene: pfam01881:cas6 Type: other Location: 308190-308984 bp Gene: pfam13280:WYL Type: other Location: 309005-309919 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 299867-300354 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADEP010000008.1 Clostridioides difficile strain SWE004 genome assembly, contig: ERS199769SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 214289 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 123117-123345 bp Zoom in on locus 1 x4 CRISPR array Location: 123117-123345 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 123117-123345 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 123117-123345 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADEP010000001.1 Clostridioides difficile strain SWE004 genome assembly, contig: ERS199769SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 747189 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 317241-325106 bp 2 Locus 2: 487057-487611 bp Zoom in on locus 1 Zoom in on locus 2 x9 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 317241-318350 bp Gene: pfam01881:cas6 Type: other Location: 318608-319345 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 319350-320825 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 320845-321858 bp Gene: cd09693:cas5 Type: Type-I Location: 321874-322671 bp Gene: cd09641:cas3HD Type: Type-I Location: 322698-325106 bp CRISPR array Location: 487057-487611 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 487057-487611 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 487057-487611 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADEP010000002.1 Clostridioides difficile strain SWE004 genome assembly, contig: ERS199769SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 611157 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 372924-373218 bp Zoom in on locus 1 x5 CRISPR array Location: 372924-373218 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 372924-373218 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 372924-373218 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)