CRISPRone

CRISPRone report for GCA_900692305.1_9221_6_41

♦ Seq 1: CAADEN010000006.1 Clostridioides difficile strain SWE007 genome assembly, contig: ERS199772SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 252266 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18121-18877 bp 2 Locus 2: 193841-195653 bp Zoom in on locus 1 x12 Zoom in on locus 2 x28 CRISPR array Location: 18121-18877 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 18121-18877 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 193841-195653 bp Num of repeats: 28 Spacers: s12-s38 CRISPR array Location: 193841-195653 bp Num of repeats: 28 Spacers: s12-s38 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18121-18877 bp]: array | spacers
           [Locus range 193841-195653 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADEN010000011.1 Clostridioides difficile strain SWE007 genome assembly, contig: ERS199772SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 154172 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91518-91745 bp Zoom in on locus 1 x4 CRISPR array Location: 91518-91745 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 91518-91745 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91518-91745 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADEN010000005.1 Clostridioides difficile strain SWE007 genome assembly, contig: ERS199772SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 265541 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252408-262460 bp Zoom in on locus 1 x8 CRISPR array Location: 252408-252895 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 252408-252895 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09725:cas2 Type: universal Location: 253079-253345 bp Gene: cd09722:cas1 Type: universal Location: 253348-254328 bp Gene: pfam01930:cas4 Type: Type-I Location: 254331-254849 bp Gene: COG1203:cas3 Type: Type-I Location: 254897-257218 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 257229-257930 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 257932-258846 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 258848-260725 bp Gene: pfam01881:cas6 Type: other Location: 260731-261525 bp Gene: pfam13280:WYL Type: other Location: 261546-262460 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252408-252895 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADEN010000001.1 Clostridioides difficile strain SWE007 genome assembly, contig: ERS199772SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 1042373 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 277834-285699 bp 2 Locus 2: 447650-448136 bp 3 Locus 3: 810407-810701 bp Zoom in on locus 1 Zoom in on locus 2 x8 Zoom in on locus 3 x5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 277834-278943 bp Gene: pfam01881:cas6 Type: other Location: 279201-279938 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 279943-281418 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 281438-282451 bp Gene: cd09693:cas5 Type: Type-I Location: 282467-283264 bp Gene: cd09641:cas3HD Type: Type-I Location: 283291-285699 bp CRISPR array Location: 447650-448136 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 447650-448136 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 810407-810701 bp Num of repeats: 5 Spacers: s8-s11 CRISPR array Location: 810407-810701 bp Num of repeats: 5 Spacers: s8-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 447650-448136 bp]: array | spacers
           [Locus range 810407-810701 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADEN010000003.1 Clostridioides difficile strain SWE007 genome assembly, contig: ERS199772SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 306121 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 262143-262237 bp Zoom in on locus 1 x2 CRISPR array Location: 262143-262237 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 262143-262237 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 262143-262237 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)