CRISPRone

CRISPRone report for GCA_900692315.1_9221_6_40

♦ Seq 1: CAADEL010000009.1 Clostridioides difficile strain SWE006 genome assembly, contig: ERS199771SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 151910 bp; # of CRISPR array = 6; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19261-20017 bp 2 Locus 2: 109540-117942 bp Zoom in on locus 1 x12 Zoom in on locus 2 x7 x9 x4 x5 x10 CRISPR array Location: 19261-20017 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 19261-20017 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 109540-109965 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 109540-109965 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 110567-111123 bp Num of repeats: 9 Spacers: s18-s25 CRISPR array Location: 110567-111123 bp Num of repeats: 9 Spacers: s18-s25 CRISPR array Location: 113224-113450 bp Num of repeats: 4 Spacers: s26-s28 CRISPR array Location: 113224-113450 bp Num of repeats: 4 Spacers: s26-s28 CRISPR array Location: 115312-115603 bp Num of repeats: 5 Spacers: s29-s32 CRISPR array Location: 115312-115603 bp Num of repeats: 5 Spacers: s29-s32 CRISPR array Location: 117315-117942 bp Num of repeats: 10 Spacers: s33-s41 CRISPR array Location: 117315-117942 bp Num of repeats: 10 Spacers: s33-s41 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19261-20017 bp]: array | spacers
           [Locus range 109540-109965 bp]: array | spacers
           [Locus range 110567-111123 bp]: array | spacers
           [Locus range 113224-113450 bp]: array | spacers
           [Locus range 115312-115603 bp]: array | spacers
           [Locus range 117315-117942 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADEL010000020.1 Clostridioides difficile strain SWE006 genome assembly, contig: ERS199771SCcontig000020, whole genome shotgun sequence

⇒Summary: seq-len = 38057 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3359-3453 bp Zoom in on locus 1 x2 CRISPR array Location: 3359-3453 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 3359-3453 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3359-3453 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADEL010000007.1 Clostridioides difficile strain SWE006 genome assembly, contig: ERS199771SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 214429 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90945-91172 bp Zoom in on locus 1 x4 CRISPR array Location: 90945-91172 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 90945-91172 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90945-91172 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADEL010000001.1 Clostridioides difficile strain SWE006 genome assembly, contig: ERS199771SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 644736 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 77286-77771 bp 2 Locus 2: 239722-247587 bp Zoom in on locus 1 x8 Zoom in on locus 2 CRISPR array Location: 77286-77771 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 77286-77771 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09641:cas3HD Type: Type-I Location: 239722-242130 bp Gene: cd09693:cas5 Type: Type-I Location: 242157-242954 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 242970-243983 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 244003-245478 bp Gene: pfam01881:cas6 Type: other Location: 245483-246220 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 246478-247587 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 77286-77771 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADEL010000002.1 Clostridioides difficile strain SWE006 genome assembly, contig: ERS199771SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 561908 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 323635-323929 bp Zoom in on locus 1 x5 CRISPR array Location: 323635-323929 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 323635-323929 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 323635-323929 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADEL010000008.1 Clostridioides difficile strain SWE006 genome assembly, contig: ERS199771SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 176882 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 118455-120267 bp Zoom in on locus 1 x28 CRISPR array Location: 118455-120267 bp Num of repeats: 28 Spacers: s1-s27 CRISPR array Location: 118455-120267 bp Num of repeats: 28 Spacers: s1-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 118455-120267 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAADEL010000003.1 Clostridioides difficile strain SWE006 genome assembly, contig: ERS199771SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 443848 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 181350-191403 bp Zoom in on locus 1 x8 Gene: pfam13280:WYL Type: other Location: 181350-182264 bp Gene: pfam01881:cas6 Type: other Location: 182285-183079 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 183085-184962 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 184964-185878 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 185880-186581 bp Gene: COG1203:cas3 Type: Type-I Location: 186592-188913 bp Gene: pfam01930:cas4 Type: Type-I Location: 188928-189479 bp Gene: cd09722:cas1 Type: universal Location: 189482-190462 bp Gene: cd09725:cas2 Type: universal Location: 190465-190731 bp CRISPR array Location: 190915-191403 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 190915-191403 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 190915-191403 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)