CRISPRone

CRISPRone report for GCA_900692325.1_9221_6_37

♦ Seq 1: CAADEM010000001.1 Clostridioides difficile strain SWE003 genome assembly, contig: ERS199768SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 743901 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 313943-321808 bp 2 Locus 2: 483759-484313 bp Zoom in on locus 1 Zoom in on locus 2 x9 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 313943-315052 bp Gene: pfam01881:cas6 Type: other Location: 315310-316047 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 316052-317527 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 317547-318560 bp Gene: cd09693:cas5 Type: Type-I Location: 318576-319373 bp Gene: cd09641:cas3HD Type: Type-I Location: 319400-321808 bp CRISPR array Location: 483759-484313 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 483759-484313 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 483759-484313 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADEM010000002.1 Clostridioides difficile strain SWE003 genome assembly, contig: ERS199768SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 721265 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 299917-309969 bp Zoom in on locus 1 x8 CRISPR array Location: 299917-300404 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 299917-300404 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09725:cas2 Type: universal Location: 300588-300854 bp Gene: cd09722:cas1 Type: universal Location: 300857-301837 bp Gene: pfam01930:cas4 Type: Type-I Location: 301840-302358 bp Gene: COG1203:cas3 Type: Type-I Location: 302406-304727 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 304738-305439 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 305441-306355 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 306357-308234 bp Gene: pfam01881:cas6 Type: other Location: 308240-309034 bp Gene: pfam13280:WYL Type: other Location: 309055-309969 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 299917-300404 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADEM010000003.1 Clostridioides difficile strain SWE003 genome assembly, contig: ERS199768SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 469215 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 58090-59833 bp 2 Locus 2: 234669-235556 bp 3 Locus 3: 345882-346109 bp Zoom in on locus 1 x27 Zoom in on locus 2 x14 Zoom in on locus 3 x4 CRISPR array Location: 58090-59833 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 58090-59833 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 234669-235556 bp Num of repeats: 14 Spacers: s27-s39 CRISPR array Location: 234669-235556 bp Num of repeats: 14 Spacers: s27-s39 CRISPR array Location: 345882-346109 bp Num of repeats: 4 Spacers: s40-s42 CRISPR array Location: 345882-346109 bp Num of repeats: 4 Spacers: s40-s42 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 58090-59833 bp]: array | spacers
           [Locus range 234669-235556 bp]: array | spacers
           [Locus range 345882-346109 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADEM010000006.1 Clostridioides difficile strain SWE003 genome assembly, contig: ERS199768SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 342054 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 239249-239542 bp Zoom in on locus 1 x5 CRISPR array Location: 239249-239542 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 239249-239542 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 239249-239542 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADEM010000005.1 Clostridioides difficile strain SWE003 genome assembly, contig: ERS199768SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 386045 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 313300-313394 bp Zoom in on locus 1 x2 CRISPR array Location: 313300-313394 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 313300-313394 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 313300-313394 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)