CRISPRone

CRISPRone report for GCA_900692335.1_9221_6_42

♦ Seq 1: CAADEQ010000023.1 Clostridioides difficile strain SWE008 genome assembly, contig: ERS199773SCcontig000023, whole genome shotgun sequence

⇒Summary: seq-len = 38591 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 34606-34699 bp Zoom in on locus 1 x2 CRISPR array Location: 34606-34699 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 34606-34699 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 34606-34699 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADEQ010000002.1 Clostridioides difficile strain SWE008 genome assembly, contig: ERS199773SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 536084 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 340255-348120 bp 2 Locus 2: 510071-510557 bp Zoom in on locus 1 Zoom in on locus 2 x8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 340255-341364 bp Gene: pfam01881:cas6 Type: other Location: 341622-342359 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 342364-343839 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 343859-344872 bp Gene: cd09693:cas5 Type: Type-I Location: 344888-345685 bp Gene: cd09641:cas3HD Type: Type-I Location: 345712-348120 bp CRISPR array Location: 510071-510557 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 510071-510557 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 510071-510557 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADEQ010000001.1 Clostridioides difficile strain SWE008 genome assembly, contig: ERS199773SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 843974 bp; # of CRISPR array = 8; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 134887-135643 bp 2 Locus 2: 225166-233568 bp 3 Locus 3: 374421-376167 bp 4 Locus 4: 581470-591523 bp Zoom in on locus 1 x12 Zoom in on locus 2 x7 x9 x4 x5 x10 Zoom in on locus 3 x27 Zoom in on locus 4 x8 CRISPR array Location: 134887-135643 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 134887-135643 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 225166-225591 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 225166-225591 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 226193-226749 bp Num of repeats: 9 Spacers: s18-s25 CRISPR array Location: 226193-226749 bp Num of repeats: 9 Spacers: s18-s25 CRISPR array Location: 228850-229076 bp Num of repeats: 4 Spacers: s26-s28 CRISPR array Location: 228850-229076 bp Num of repeats: 4 Spacers: s26-s28 CRISPR array Location: 230938-231229 bp Num of repeats: 5 Spacers: s29-s32 CRISPR array Location: 230938-231229 bp Num of repeats: 5 Spacers: s29-s32 CRISPR array Location: 232941-233568 bp Num of repeats: 10 Spacers: s33-s41 CRISPR array Location: 232941-233568 bp Num of repeats: 10 Spacers: s33-s41 CRISPR array Location: 374421-376167 bp Num of repeats: 27 Spacers: s42-s67 CRISPR array Location: 374421-376167 bp Num of repeats: 27 Spacers: s42-s67 Gene: pfam13280:WYL Type: other Location: 581470-582384 bp Gene: pfam01881:cas6 Type: other Location: 582405-583199 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 583205-585082 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 585084-585998 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 586000-586701 bp Gene: COG1203:cas3 Type: Type-I Location: 586712-589033 bp Gene: pfam01930:cas4 Type: Type-I Location: 589048-589599 bp Gene: cd09722:cas1 Type: universal Location: 589602-590582 bp Gene: cd09725:cas2 Type: universal Location: 590585-590851 bp CRISPR array Location: 591035-591523 bp Num of repeats: 8 Spacers: s68-s74 CRISPR array Location: 591035-591523 bp Num of repeats: 8 Spacers: s68-s74 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 134887-135643 bp]: array | spacers
           [Locus range 225166-225591 bp]: array | spacers
           [Locus range 226193-226749 bp]: array | spacers
           [Locus range 228850-229076 bp]: array | spacers
           [Locus range 230938-231229 bp]: array | spacers
           [Locus range 232941-233568 bp]: array | spacers
           [Locus range 374421-376167 bp]: array | spacers
           [Locus range 591035-591523 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADEQ010000009.1 Clostridioides difficile strain SWE008 genome assembly, contig: ERS199773SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 146556 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 123107-123335 bp Zoom in on locus 1 x4 CRISPR array Location: 123107-123335 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 123107-123335 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 123107-123335 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADEQ010000007.1 Clostridioides difficile strain SWE008 genome assembly, contig: ERS199773SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 195505 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61379-61673 bp Zoom in on locus 1 x5 CRISPR array Location: 61379-61673 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 61379-61673 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 61379-61673 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)