CRISPRone

CRISPRone report for GCA_900692345.1_9221_6_39

♦ Seq 1: CAADEO010000011.1 Clostridioides difficile strain SWE005 genome assembly, contig: ERS199770SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 150661 bp; # of CRISPR array = 6; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18541-19297 bp 2 Locus 2: 108820-117222 bp Zoom in on locus 1 x12 Zoom in on locus 2 x7 x9 x4 x5 x10 CRISPR array Location: 18541-19297 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 18541-19297 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 108820-109245 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 108820-109245 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 109847-110403 bp Num of repeats: 9 Spacers: s18-s25 CRISPR array Location: 109847-110403 bp Num of repeats: 9 Spacers: s18-s25 CRISPR array Location: 112504-112730 bp Num of repeats: 4 Spacers: s26-s28 CRISPR array Location: 112504-112730 bp Num of repeats: 4 Spacers: s26-s28 CRISPR array Location: 114592-114883 bp Num of repeats: 5 Spacers: s29-s32 CRISPR array Location: 114592-114883 bp Num of repeats: 5 Spacers: s29-s32 CRISPR array Location: 116595-117222 bp Num of repeats: 10 Spacers: s33-s41 CRISPR array Location: 116595-117222 bp Num of repeats: 10 Spacers: s33-s41 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18541-19297 bp]: array | spacers
           [Locus range 108820-109245 bp]: array | spacers
           [Locus range 109847-110403 bp]: array | spacers
           [Locus range 112504-112730 bp]: array | spacers
           [Locus range 114592-114883 bp]: array | spacers
           [Locus range 116595-117222 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADEO010000023.1 Clostridioides difficile strain SWE005 genome assembly, contig: ERS199770SCcontig000023, whole genome shotgun sequence

⇒Summary: seq-len = 37799 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2827-2921 bp Zoom in on locus 1 x2 CRISPR array Location: 2827-2921 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 2827-2921 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2827-2921 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADEO010000002.1 Clostridioides difficile strain SWE005 genome assembly, contig: ERS199770SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 411058 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 148603-158656 bp Zoom in on locus 1 x8 Gene: pfam13280:WYL Type: other Location: 148603-149517 bp Gene: pfam01881:cas6 Type: other Location: 149538-150332 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 150338-152215 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 152217-153131 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 153133-153834 bp Gene: COG1203:cas3 Type: Type-I Location: 153845-156166 bp Gene: pfam01930:cas4 Type: Type-I Location: 156181-156732 bp Gene: cd09722:cas1 Type: universal Location: 156735-157715 bp Gene: cd09725:cas2 Type: universal Location: 157718-157984 bp CRISPR array Location: 158168-158656 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 158168-158656 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 158168-158656 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADEO010000009.1 Clostridioides difficile strain SWE005 genome assembly, contig: ERS199770SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 182857 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56617-58428 bp Zoom in on locus 1 x28 CRISPR array Location: 56617-58428 bp Num of repeats: 28 Spacers: s1-s27 CRISPR array Location: 56617-58428 bp Num of repeats: 28 Spacers: s1-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 56617-58428 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADEO010000003.1 Clostridioides difficile strain SWE005 genome assembly, contig: ERS199770SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 341514 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 102507-102801 bp Zoom in on locus 1 x5 CRISPR array Location: 102507-102801 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 102507-102801 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 102507-102801 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADEO010000001.1 Clostridioides difficile strain SWE005 genome assembly, contig: ERS199770SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 610523 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 395664-403529 bp 2 Locus 2: 565480-565966 bp Zoom in on locus 1 Zoom in on locus 2 x8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 395664-396773 bp Gene: pfam01881:cas6 Type: other Location: 397031-397768 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 397773-399248 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 399268-400281 bp Gene: cd09693:cas5 Type: Type-I Location: 400297-401094 bp Gene: cd09641:cas3HD Type: Type-I Location: 401121-403529 bp CRISPR array Location: 565480-565966 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 565480-565966 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 565480-565966 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAADEO010000008.1 Clostridioides difficile strain SWE005 genome assembly, contig: ERS199770SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 214288 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90945-91172 bp Zoom in on locus 1 x4 CRISPR array Location: 90945-91172 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 90945-91172 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90945-91172 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)