CRISPRone

CRISPRone report for GCA_900692365.1_9221_6_44

♦ Seq 1: CAADER010000002.1 Clostridioides difficile strain SWE010 genome assembly, contig: ERS199775SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 410635 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252447-262499 bp Zoom in on locus 1 x8 CRISPR array Location: 252447-252934 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 252447-252934 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09725:cas2 Type: universal Location: 253118-253384 bp Gene: cd09722:cas1 Type: universal Location: 253387-254367 bp Gene: pfam01930:cas4 Type: Type-I Location: 254370-254888 bp Gene: COG1203:cas3 Type: Type-I Location: 254936-257257 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 257268-257969 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 257971-258885 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 258887-260764 bp Gene: pfam01881:cas6 Type: other Location: 260770-261564 bp Gene: pfam13280:WYL Type: other Location: 261585-262499 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252447-252934 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADER010000011.1 Clostridioides difficile strain SWE010 genome assembly, contig: ERS199775SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 145397 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 123495-123723 bp Zoom in on locus 1 x4 CRISPR array Location: 123495-123723 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 123495-123723 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 123495-123723 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADER010000004.1 Clostridioides difficile strain SWE010 genome assembly, contig: ERS199775SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 314270 bp; # of CRISPR array = 7; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18541-19297 bp 2 Locus 2: 108820-117222 bp 3 Locus 3: 255909-257655 bp Zoom in on locus 1 x12 Zoom in on locus 2 x7 x9 x4 x5 x10 Zoom in on locus 3 x27 CRISPR array Location: 18541-19297 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 18541-19297 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 108820-109245 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 108820-109245 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 109847-110403 bp Num of repeats: 9 Spacers: s18-s25 CRISPR array Location: 109847-110403 bp Num of repeats: 9 Spacers: s18-s25 CRISPR array Location: 112504-112730 bp Num of repeats: 4 Spacers: s26-s28 CRISPR array Location: 112504-112730 bp Num of repeats: 4 Spacers: s26-s28 CRISPR array Location: 114592-114883 bp Num of repeats: 5 Spacers: s29-s32 CRISPR array Location: 114592-114883 bp Num of repeats: 5 Spacers: s29-s32 CRISPR array Location: 116595-117222 bp Num of repeats: 10 Spacers: s33-s41 CRISPR array Location: 116595-117222 bp Num of repeats: 10 Spacers: s33-s41 CRISPR array Location: 255909-257655 bp Num of repeats: 27 Spacers: s42-s67 CRISPR array Location: 255909-257655 bp Num of repeats: 27 Spacers: s42-s67 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18541-19297 bp]: array | spacers
           [Locus range 108820-109245 bp]: array | spacers
           [Locus range 109847-110403 bp]: array | spacers
           [Locus range 112504-112730 bp]: array | spacers
           [Locus range 114592-114883 bp]: array | spacers
           [Locus range 116595-117222 bp]: array | spacers
           [Locus range 255909-257655 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADER010000001.1 Clostridioides difficile strain SWE010 genome assembly, contig: ERS199775SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 538955 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 343126-350991 bp 2 Locus 2: 512942-513428 bp Zoom in on locus 1 Zoom in on locus 2 x8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 343126-344235 bp Gene: pfam01881:cas6 Type: other Location: 344493-345230 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 345235-346710 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 346730-347743 bp Gene: cd09693:cas5 Type: Type-I Location: 347759-348556 bp Gene: cd09641:cas3HD Type: Type-I Location: 348583-350991 bp CRISPR array Location: 512942-513428 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 512942-513428 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 512942-513428 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADER010000008.1 Clostridioides difficile strain SWE010 genome assembly, contig: ERS199775SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 172752 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 133941-134234 bp Zoom in on locus 1 x5 CRISPR array Location: 133941-134234 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 133941-134234 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 133941-134234 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADER010000025.1 Clostridioides difficile strain SWE010 genome assembly, contig: ERS199775SCcontig000025, whole genome shotgun sequence

⇒Summary: seq-len = 37522 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 34606-34699 bp Zoom in on locus 1 x2 CRISPR array Location: 34606-34699 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 34606-34699 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 34606-34699 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)