CRISPRone

CRISPRone report for GCA_900696735.1_Metronidazole_resistant_Clostridioides_difficile

♦ Seq 1: CAADHH010000001.1 Clostridioides difficile isolate RT020 genome assembly, contig: Edena126_1, whole genome shotgun sequence

⇒Summary: seq-len = 658522 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 253496-264633 bp 2 Locus 2: 486900-486993 bp Zoom in on locus 1 x25 Zoom in on locus 2 x2 CRISPR array Location: 253496-255095 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 253496-255095 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 255279-255545 bp Gene: cd09722:cas1 Type: universal Location: 255548-256528 bp Gene: pfam01930:cas4 Type: Type-I Location: 256531-257049 bp Gene: COG1203:cas3 Type: Type-I Location: 257097-259418 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 259429-260130 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 260132-261046 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 261048-262898 bp Gene: pfam01881:cas6 Type: other Location: 262904-263698 bp Gene: pfam13280:WYL Type: other Location: 263719-264633 bp CRISPR array Location: 486900-486993 bp Num of repeats: 2 Spacers: s25-s25 CRISPR array Location: 486900-486993 bp Num of repeats: 2 Spacers: s25-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 253496-255095 bp]: array | spacers
           [Locus range 486900-486993 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAADHH010000004.1 Clostridioides difficile isolate RT020 genome assembly, contig: Edena126_4, whole genome shotgun sequence

⇒Summary: seq-len = 349651 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125296-125855 bp 2 Locus 2: 236176-236933 bp Zoom in on locus 1 x9 Zoom in on locus 2 x12 CRISPR array Location: 125296-125855 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 125296-125855 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 236176-236933 bp Num of repeats: 12 Spacers: s9-s19 CRISPR array Location: 236176-236933 bp Num of repeats: 12 Spacers: s9-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 125296-125855 bp]: array | spacers
           [Locus range 236176-236933 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAADHH010000011.1 Clostridioides difficile isolate RT020 genome assembly, contig: Edena126_15, whole genome shotgun sequence

⇒Summary: seq-len = 128663 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63812-64962 bp Zoom in on locus 1 x18 CRISPR array Location: 63812-64962 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 63812-64962 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63812-64962 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAADHH010000002.1 Clostridioides difficile isolate RT020 genome assembly, contig: Edena126_2, whole genome shotgun sequence

⇒Summary: seq-len = 576242 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 84873-85489 bp 2 Locus 2: 248761-257082 bp 3 Locus 3: 330365-330722 bp Zoom in on locus 1 x10 Zoom in on locus 2 Zoom in on locus 3 x6 CRISPR array Location: 84873-85489 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 84873-85489 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09641:cas3HD Type: Type-I Location: 248761-251169 bp Gene: cd09693:cas5 Type: Type-I Location: 251196-251993 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 252009-253025 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 253045-254520 bp Gene: pfam01881:cas6 Type: other Location: 254525-255262 bp Gene: unk Type: unknown Location: 255363-255539 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 255973-257082 bp CRISPR array Location: 330365-330722 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 330365-330722 bp Num of repeats: 6 Spacers: s10-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 84873-85489 bp]: array | spacers
           [Locus range 330365-330722 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAADHH010000005.1 Clostridioides difficile isolate RT020 genome assembly, contig: Edena126_3, whole genome shotgun sequence

⇒Summary: seq-len = 263391 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 175714-176863 bp Zoom in on locus 1 x18 CRISPR array Location: 175714-176863 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 175714-176863 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 175714-176863 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAADHH010000003.1 Clostridioides difficile isolate RT020 genome assembly, contig: Edena126_5, whole genome shotgun sequence

⇒Summary: seq-len = 404667 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 291725-291886 bp Zoom in on locus 1 x3 CRISPR array Location: 291725-291886 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 291725-291886 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 291725-291886 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)