CRISPRone

CRISPRone report for GCA_900706955.1_36340_D01

♦ Seq 1: CAADJS010000002.1 Pseudomonas aeruginosa strain NCTC13437 genome assembly, contig: ERS666352SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 5857757 bp; # of CRISPR array = 3; # of cas gene = 13  (type I, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1096628-1101446 bp 2 Locus 2: 1581400-1591709 bp 3 Locus 3: 3154743-3155190 bp 4 Locus 4: 5132039-5141900 bp Zoom in on locus 1 Zoom in on locus 2 x13 x17 Zoom in on locus 3 x8 Zoom in on locus 4 Gene: cd09706:csf2gr7 Type: Subtype-IV-A Location: 1096628-1097671 bp Gene: mkCas0159:csf5gr6 Type: Subtype-IV-A Location: 1098458-1099183 bp Gene: unk Type: unknown Location: 1099647-1100039 bp Gene: cd09708:DinG Type: Subtype-IV-A Location: 1099938-1101446 bp CRISPR array Location: 1581400-1582148 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 1581400-1582148 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09718:cas1 Type: universal Location: 1582399-1583373 bp Gene: COG1203:cas3 Type: Type-I Location: 1583370-1586600 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 1586658-1587962 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 1587949-1588932 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1588943-1589971 bp Gene: cd09739:cas6f Type: other Location: 1589975-1590538 bp CRISPR array Location: 1590722-1591709 bp Num of repeats: 17 Spacers: s13-s28 CRISPR array Location: 1590722-1591709 bp Num of repeats: 17 Spacers: s13-s28 CRISPR array Location: 3154743-3155190 bp Num of repeats: 8 Spacers: s29-s35 CRISPR array Location: 3154743-3155190 bp Num of repeats: 8 Spacers: s29-s35 Gene: mkCas0115:csx3 Type: other Location: 5132039-5133649 bp Gene: pfam13280:WYL Type: other Location: 5133810-5134826 bp Gene: unk Type: unknown Location: 5136098-5136277 bp Gene: unk Type: unknown Location: 5136587-5137120 bp Gene: pfam13280:WYL Type: other Location: 5137135-5138010 bp Gene: unk Type: unknown Location: 5138141-5138428 bp Gene: unk Type: unknown Location: 5138563-5139141 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 5139534-5141900 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1581400-1582148 bp]: array | spacers
           [Locus range 1590722-1591709 bp]: array | spacers
           [Locus range 3154743-3155190 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)